PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010916708.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 270aa MW: 30836.5 Da PI: 4.7038

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916708.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.2e-19	66	118	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV vWFqNrRa++k XP_010916708.1 66 KRRLRVDQVKALEKNFEVENKLDPDRKARLAQDLGLQPRQVAVWFQNRRARWK 118 4578899*********************************************9 PP
2	HD-ZIP_I/II	126	1.7e-40	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl +qvk+LE++Fe e+kL+p+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy aL+++y+alk + ++L++++e+L++e+ke XP_010916708.1 64 EKKRRLRVDQVKALEKNFEVENKLDPDRKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYGALQARYEALKIDCDALRHDKEKLTAEIKE 156 69****************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-19	60	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	60	120	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	63	124	IPR001356	Homeobox domain
CDD	cd00086	6.49E-16	65	121	No hit	No description
Pfam	PF00046	3.8E-16	66	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-20	72	119	IPR009057	Homeodomain-like
PRINTS	PR00031	8.2E-6	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.2E-6	100	116	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-17	120	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MKRPSSSDSF GGMEEKEPGL IPISPSMEEQ AKYEGRFQPM LDGMEGVECE DEELCTYGQS 60 ALGEKKRRLR VDQVKALEKN FEVENKLDPD RKARLAQDLG LQPRQVAVWF QNRRARWKTK 120 QLERDYGALQ ARYEALKIDC DALRHDKEKL TAEIKELRAK LVNPAAVTRL KNKDAEERPA 180 LIYKDGASDS DSSVVFNDHE NSPYSGVVLD QDYFMGFKSY SSSSSLFESR ALDQKEYLEE 240 GFLSGEELCS GLFSEEQAPS LSWYCSEPWK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	DRKARLA
2	112	120	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916708.1	0.0	homeobox-leucine zipper protein HOX4 isoform X2
TrEMBL	A0A2H3Y8W4	1e-169	A0A2H3Y8W4_PHODC; homeobox-leucine zipper protein HOX4-like
STRING	XP_008795210.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-60	homeobox protein 16