PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916699.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 324aa    MW: 36308.1 Da    PI: 5.152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916699.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13119170155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r+ h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  XP_010916699.1 119 QRMIHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINYVKELE 170
                     6999**************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.87E-15117174No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14117174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17118184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVFPQ GFFGYTCKEW CYNMGGEAWG YDFGRVGEEE EEKREVLECE LGTGKVGGSW  60
DPPASSLVQN LEEWDANSSL PEPCEGIALE GEAMGAAAAG RRKRRRAKSV KNKEEVESQR  120
MIHIAVERNR RKQMNEYLAV LRSLMPSSYV QRGDQASIIG GAINYVKELE QLLQSLEVQK  180
RLKQRSDATG LVHPFANFFA FPQYSSCSSG GSTTTHTSSN HNIANEMAVE NRSAMADIEV  240
TMVESYANLK VLSRRWPKQL LKMVMGLQNM RLTTLHLNVT TVDQLVLYSF SLKVEDDCQF  300
TSVDDIATAV YQMLGRIQEE ANFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2119130RMIHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916699.10.0transcription factor bHLH94
SwissprotQ9C7T45e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3YWD40.0A0A2H3YWD4_PHODC; transcription factor bHLH94-like
STRINGXP_008804795.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]