PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916515.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 388aa    MW: 41433.2 Da    PI: 5.1543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916515.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14199245354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_010916515.1 199 KSHSEAERRRRERINAHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 245
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.774196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14200255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14200253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-5209248No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-6282354No hitNo description
CDDcd048731.36E-5282329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MENNGEGSSS RGHEFQGYQE EEQQQQHYNN NNMSNQSGGG GAGGEGFVYP TEAAAAAAIG  60
VGVGGVASSS VLPWPLPPIH HLSSTQFAPS DLVRDQNQEQ FFPSLPPLPP PPPPPPPPPP  120
FYADLYARRA STALQFAYGG AGLGSSSDPL GLGGLYMGSE ALARGGGVSP LSAFGGLHAE  180
LGKLTPQEIM DAKALAASKS HSEAERRRRE RINAHLAKLR SLLPSTTKTD KASLLAEVIQ  240
HVKELKRQTS EIAEDSPLPT ESDELTVDAS SDEDGRFIVK ASLCCDDRSD LLPDLIKALK  300
ALRLRTLKAE ITTLGGRVKN VLVITGEDDA DHQQQQQSIA SIQEALKAVM ERTTASDEPS  360
SAGGIKRQRT TNLSTILEHR EQLYDGFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704607.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-86BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2H3Z8S50.0A0A2H3Z8S5_PHODC; transcription factor bHLH30-like
STRINGXP_008809828.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]