PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916405.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 309aa    MW: 35046.3 Da    PI: 6.9284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916405.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_010916405.1 19 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding51.13.2e-1672115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010916405.1  72 RGNLSPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 115
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.961466IPR017930Myb domain
SuperFamilySSF466899.98E-3116113IPR009057Homeodomain-like
SMARTSM007171.6E-141868IPR001005SANT/Myb domain
PfamPF002491.3E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222073IPR009057Homeodomain-like
CDDcd001677.42E-122166No hitNo description
PROSITE profilePS5129424.80267121IPR017930Myb domain
SMARTSM007178.2E-1571119IPR001005SANT/Myb domain
PfamPF002494.3E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2374120IPR009057Homeodomain-like
CDDcd001674.37E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSEKRGSNKY EEDKVDLRRG PWTLEEDTLL IHYIACHGEG RWNLLAKCSG LKRTGKSCRL  60
RWLNYLKPDI KRGNLSPEEQ FLILELHSKW GNRWSRIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARQLKIDANS AMFRDAIRCY WMPRLLEKMG SSQSMPSLTD SNATTTAGTM EQMITPHGPP  180
QPFSNPAMHY YYPFEGCSSY DPPGSENHSP TTSSASMPLP QLPNLSEFSS GPPDNYSGAS  240
FNPFTSGHCV DNSYGLDAMD LDPVSATQLG FSVSDYTMGN NNCVDNLGDG LWNMNELWYV  300
RKLNEWGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26161214108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916405.10.0transcription factor MYB62
TrEMBLA0A2H3YEZ40.0A0A2H3YEZ4_PHODC; transcription factor MYB62-like
STRINGXP_008797802.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-81myb domain protein 62