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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25905.4 Da PI: 8.384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_010916352.1 13 KGAWTKQEDEKLINYIRAHGEGSWRSLPKAAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_010916352.1 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.713 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.78E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.036 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 63 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRKPCCDKQD TNKGAWTKQE DEKLINYIRA HGEGSWRSLP KAAGLLRCGK SCRLRWINYL 60 RPNVKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLMSMGI 120 DPNNHHVSQR VPLHQPQNSG NVTLLGGPVN HERMECQQLN PVTENDRVSD SESCLEDNAS 180 MLPDLNLDLT KSIPSPPPTV VEWRPESEEL KASSELGNAT KPTLLLFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916352.1 | 1e-168 | myb-related protein 308 | ||||
Swissprot | P81393 | 3e-75 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2H3YF23 | 1e-147 | A0A2H3YF23_PHODC; myb-related protein 308-like | ||||
STRING | XP_008797850.1 | 1e-148 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-76 | myb domain protein 4 |
Publications ? help Back to Top | |||
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