PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916238.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 381aa MW: 42358.8 Da PI: 5.8542

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916238.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.5	1e-33	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k ye+++d++++ ++swse++nsfv++d+ +f +++LpkyFkhsn++SFvRQLn+YgF+kv+ ++ eF+++ F +g+k+ll++ XP_010916238.1 25 FLSKCYEMVDDPQTNGTVSWSETNNSFVIWDPATFCRDLLPKYFKHSNLSSFVRQLNTYGFRKVDPDR---------HEFANEGFLRGQKDLLKT 110 9***************************************************************99.........57************ PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i rkk + XP_010916238.1 111 ITRKKPS 117 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-54	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.2E-36	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-33	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.4E-18	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.7E-30	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MEVEKGGGGG GGGGASSLVP VVPPFLSKCY EMVDDPQTNG TVSWSETNNS FVIWDPATFC 60 RDLLPKYFKH SNLSSFVRQL NTYGFRKVDP DRHEFANEGF LRGQKDLLKT ITRKKPSHNA 120 VQQHQSQGRN TSVKACVEVG KFGPKEEIEM LKRDKNVLMQ ELVKLRQHQQ DTDHEVRIVR 180 QRIQGMEQHQ QQMMSFLAMA VKSPGVVAQL MQQSGNNRLT EANKKRRLPA LEQGVVGSSQ 240 TSSDGQIIRY QPFMPETLRS SMSPMPNSVV STNFQPMSNG VNDLCTNVDV MSLGANSSLP 300 PGGDLPLTEY IEQLLASPIS ENNGQIEPQS LEVPDFMLDF VLPEQEIQME ISQNMVLPSE 360 QVEGNHQASE KDSGHDKLSS L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MEVEKGGGGG GGGGASSLVP VVPPFLSKCY EMVDDPQTNG TVSWSETNNS FVIWDPATFC  60
RDLLPKYFKH SNLSSFVRQL NTYGFRKVDP DRHEFANEGF LRGQKDLLKT ITRKKPSHNA  120
VQQHQSQGRN TSVKACVEVG KFGPKEEIEM LKRDKNVLMQ ELVKLRQHQQ DTDHEVRIVR  180
QRIQGMEQHQ QQMMSFLAMA VKSPGVVAQL MQQSGNNRLT EANKKRRLPA LEQGVVGSSQ  240
TSSDGQIIRY QPFMPETLRS SMSPMPNSVV STNFQPMSNG VNDLCTNVDV MSLGANSSLP  300
PGGDLPLTEY IEQLLASPIS ENNGQIEPQS LEVPDFMLDF VLPEQEIQME ISQNMVLPSE  360
QVEGNHQASE KDSGHDKLSS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-26	9	114	17	129	Heat shock factor protein 1
5d5v_B	1e-26	9	114	17	129	Heat shock factor protein 1
5d5v_D	1e-26	9	114	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119217.1	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_029119218.1	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_029119219.1	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_029119221.1	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_029119222.1	0.0	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	1e-107	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3WYL1	0.0	A0A2H3WYL1_PHODC; heat stress transcription factor A-1-like
STRING	XP_008775686.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	2e-99	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]