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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26502.2 Da PI: 5.6151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00037 | 192 | 229 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R+++++ +Lr ++P +++ ++L +Av+Y+ksL XP_010916065.1 192 K-REKMKKMVKTLRGIIPGG-----DRMDTPAVLDEAVKYLKSL 229 4.799*************95.....59***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.842 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-6 | 186 | 234 | No hit | No description |
SMART | SM00353 | 4.9E-6 | 187 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-7 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-8 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQRDRRFFSK KASRSRGYEV GSCALDSAAG ACDADDSAAA PSFGEALTGM KHHEFPVPLN 60 GVEFQPSETC PKNFVIFDQT YNKSRVMFHP SLAHNFGSSS FDVHGTHAHE AGKSMDGDDY 120 NKGEYSSPHI EDAEEIDALL SSEEEDDDVV STGRTPGNWV GSSPDSSCSF SDGIRSSKSK 180 FNSTDASSSE RKREKMKKMV KTLRGIIPGG DRMDTPAVLD EAVKYLKSLK VEVKKLGVQN 240 LDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916065.1 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_019704507.1 | 0.0 | transcription factor bHLH144 | ||||
TrEMBL | A0A2H3XIS6 | 1e-150 | A0A2H3XIS6_PHODC; transcription factor bHLH144-like | ||||
STRING | XP_008784424.1 | 1e-151 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2083 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 7e-26 | bHLH family protein |