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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36167.3 Da PI: 6.6172 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00041 | 213 | 251 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010915877.1 213 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 251 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.95E-6 | 211 | 255 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-10 | 211 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 215 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MNRGVFQSSL VQQMMGESPS WCGMNNMRPT PEQISPLLPS ASSSSSSSVF PQYPQPSNFL 60 PMTSWHENQD LPESWSQLLL GGLVGEEERC SFTPFQAKKI DNWDDQVVYP SASAHMVDVK 120 QEGSEGGYVY SHGNGEIRSS RSPWGQILPV SSQRSCVTTS FSSNMLNFSN NKGERRHHQP 180 DQSSECNSTA TGAAFKKARV QGPSSAQSTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL 240 LEAIGYIRFL QSQIEVQGER NCIFPEDPGQ LLNDNCTKKR GPPDQDASDE PKKDLRSRGL 300 CLVPVSCTLH VGSDNGADYW APSLGGVFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915877.1 | 0.0 | transcription factor bHLH68 isoform X2 | ||||
Swissprot | Q8S3D1 | 2e-83 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2H3XG12 | 0.0 | A0A2H3XG12_PHODC; transcription factor bHLH68-like | ||||
STRING | XP_008783244.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 7e-75 | bHLH family protein |
Publications ? help Back to Top | |||
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