PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 37839.1 Da PI: 6.8533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00044 | 213 | 251 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010915876.1 213 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 251 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-10 | 211 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.53E-6 | 211 | 255 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 215 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MNRGVFQSSL VQQMMGESPS WCGMNNMRPT PEQISPLLPS ASSSSSSSVF PQYPQPSNFL 60 PMTSWHENQD LPESWSQLLL GGLVGEEERC SFTPFQAKKI DNWDDQVVYP SASAHMVDVK 120 QEGSEGGYVY SHGNGEIRSS RSPWGQILPV SSQRSCVTTS FSSNMLNFSN NKGERRHHQP 180 DQSSECNSTA TGAAFKKARV QGPSSAQSTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL 240 LEAIGYIRFL QSQIEALSSP YLGSGSGNVR QPVQGERNCI FPEDPGQLLN DNCTKKRGPP 300 DQDASDEPKK DLRSRGLCLV PVSCTLHVGS DNGADYWAPS LGGVFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915876.1 | 0.0 | transcription factor bHLH68 isoform X1 | ||||
Swissprot | Q8S3D1 | 2e-92 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2H3XG12 | 0.0 | A0A2H3XG12_PHODC; transcription factor bHLH68-like | ||||
STRING | XP_008783244.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2167 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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