PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915628.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 248aa    MW: 26939 Da    PI: 8.5795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915628.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-1463109354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+++P        Kl+Ka+ L ++++++k L
  XP_010915628.1  63 KSHSEAERRRRQRINGHLATLRSMIPCT-----DKLDKAALLAEVIDHVKRL 109
                     58*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-1263110No hitNo description
PfamPF000105.6E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1464111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1364111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.8E-4148203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSSIPLGDYG VLRGFCEAPG FAAGASATLV LDGERGELVR TPAQVGKKGK GGVLDAKVAM  60
ALKSHSEAER RRRQRINGHL ATLRSMIPCT DKLDKAALLA EVIDHVKRLK SSAMEICKGC  120
TLPSDVDEVR VEVEGDEMNS GSFIIRASLC CDDRPDLLTD IRQTLQTLQL KTIRAEISTL  180
GGRVKNVVVM MCEGTASDIE KNLYTSSVHQ ALKSILDRVN SSVDLLPRTA FSNKRRRISL  240
YESSCSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915628.10.0transcription factor bHLH30
TrEMBLA0A2H3XHH81e-158A0A2H3XHH8_PHODC; transcription factor bHLH30-like
STRINGXP_008783898.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-39bHLH family protein