PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915530.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 218aa MW: 24332.9 Da PI: 6.2901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915530.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	49	95	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ e+ErrRR+++Ns+++ Lr l+Pk +K+sK ++L+ A++YIk+Lq XP_010915530.1 49 KNLEAERRRRSKLNSKLFSLRALVPKI-----TKMSKESTLTDAIDYIKQLQ 95 56799*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-17	43	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.36E-14	43	98	No hit	No description
PROSITE profile	PS50888	16.387	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-16	47	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-14	48	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-16	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MPRRPRDCVA GPSLEPNLME FVDSVLDGCG DECTEPVVME MGESRYKSKN LEAERRRRSK 60 LNSKLFSLRA LVPKITKMSK ESTLTDAIDY IKQLQKQVYD LRLELSKIPD EEGEKQGSAS 120 STETMAPTLN IQCQRTVELS PIGQKKYHLV IISENKHVGF TKLLEAISNF GAEVTNINST 180 TFSGFSHSVF SIDVKDNGEM LMTELRKLLL AIVGAADT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026655760.1	1e-104	transcription factor UDT1
Swissprot	B9FXT3	2e-45	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A3Q0HR09	1e-103	A0A3Q0HR09_PHODC; transcription factor UDT1
STRING	XP_008812089.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-28	bHLH family protein

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]