PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915439.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 278aa MW: 30638.4 Da PI: 6.6957

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915439.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.7	4.4e-34	16	108	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y++++d++++ +isw +++nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h sF kg+++ll+ XP_010915439.1 16 FVVKTYRMVNDPTTDPVISWGKDNNSFVVADPFAFSQTLLPAHFKHRNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLKGQTHLLRW 101 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r++s+ XP_010915439.1 102 IVRRNSS 108 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.0E-52	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.58E-33	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	9.5E-37	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.4E-29	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEGGSDNGGA MVAAPFVVKT YRMVNDPTTD PVISWGKDNN SFVVADPFAF SQTLLPAHFK 60 HRNFSSFVRQ LNTYGFRKVD PDRWEFAHAS FLKGQTHLLR WIVRRNSSNS KGGDRGGGGR 120 KEEEEEEEER VAMEVVRMKE EQRKIEEKVQ RMWRRVQESE RRPRQMLAFL VKVAGDPVML 180 HRLMGTSEGG KKRARLRLEG NRGELEAAPV EVGVGMDGGF QSLPVECDGG LLAVDGVDSF 240 FNAVDSLGFF DGPGSAVGGV DGSGGGAYPY SFPVGNGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-21	16	110	20	125	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	119	KGGDRGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915439.1	0.0	heat stress transcription factor C-2b
Swissprot	Q6EUG4	6e-82	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A2H3Y9K6	1e-142	A0A2H3Y9K6_PHODC; heat stress transcription factor C-2b-like
STRING	XP_008795220.1	1e-143	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-58	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]