PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010915101.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 35078.9 Da PI: 4.4155

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915101.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	3.9e-19	82	135	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LA+ lgL+ rqV +WFqNrRa++k XP_010915101.1 82 KKRRLTADQVQFLERSFELENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWK 135 56789************************************************9 PP
2	HD-ZIP_I/II	132.6	1.4e-42	81	171	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe e+kLeperKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++ydalk++ ++L +e+e+L++e+ XP_010915101.1 81 EKKRRLTADQVQFLERSFELENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALRSSYDALKTDYDNLLDEKEKLQAEV 171 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-19	73	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.653	77	137	IPR001356	Homeobox domain
SMART	SM00389	9.5E-19	80	141	IPR001356	Homeobox domain
CDD	cd00086	3.62E-17	82	138	No hit	No description
Pfam	PF00046	1.4E-16	82	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	83	144	IPR009057	Homeodomain-like
PRINTS	PR00031	9.3E-6	108	117	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.3E-6	117	133	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.6E-18	137	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAGRSYESSK MSVLLPNNWI SSEAIEALLS SGPSHGEFPG SGSVMNFEDV HGQRPEWPFC 60 RPFELEETGD EDLDEGVHRP EKKRRLTADQ VQFLERSFEL ENKLEPERKV QLARDLGLQP 120 RQVAIWFQNR RARWKTKQLE KDYEALRSSY DALKTDYDNL LDEKEKLQAE VLSLTNKVFL 180 KDKDIGSSEP FECTKFPHQP QNMVSDPMGE MKRVDGQVTV CKQEDLSSVN STVLDSGSPP 240 YIDEVDHRST LMEPVDSSNA FEPDHSDLSH TEEVDEVQGC GFLRLEDNLN NYRFPAEDQS 300 YWLWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915101.1	0.0	homeobox-leucine zipper protein HAT5
TrEMBL	A0A3Q0I7X6	1e-164	A0A3Q0I7X6_PHODC; homeobox-leucine zipper protein HAT5-like
STRING	XP_008793499.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16055	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-49	homeobox 1