PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914796.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 674aa    MW: 72696.3 Da    PI: 6.5445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914796.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16446492455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  XP_010914796.1 446 VHNLSERRRRDRINEKMRALQELIPNC-----NKTDKASMLDEAIEYLKTLQ 492
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20440501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.482442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-17445496No hitNo description
Gene3DG3DSA:4.10.280.104.2E-21446501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13446492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-17448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MPLSQYHQST SKDKAEAAQA RMNNCSADLF TMPDHEFAEL LWENGSIVMQ AHPSRPKRSS  60
FPTTFSSHAA GVHEKDGRDA GSPKASRFDA MEPMVNDFSP AAPSAHVGVN AQDDDMVPWI  120
SYPIEEPLPK DALQNDYCSE FLNEFPGANL NSPSAYNKPI ATDGSFGLGQ DIRNSHNVEH  180
ERASKAFAES SEPSRDRTSH LFQFSQHCQS SAPNSESIAT DTEIGDCTKT RLQNPDPSSP  240
KPPQLNGSML NFSHFSRPTM LAKANLHGVD GKRTDEKASA PLNGNTVEST LIESASVFKS  300
ATEVRGLSAS VPPKMVMRSS VKPPQEVIPV ERSEAICEQD ASGKNNSKVL PNNGSKPADQ  360
LASSNVALRR HETEKAPEAV VASSSVCSAN SAGAASNDAQ KGEKRRSHEG EESGYQSEDF  420
EDMSVGLRKP ATGRGTSAKR SRAAEVHNLS ERRRRDRINE KMRALQELIP NCNKTDKASM  480
LDEAIEYLKT LQMQVQIMSM NSGLCMPPLL HPPGMQHMHA PAMVRYSPMG VGMGMGIGYG  540
YGMGMYDMNG SPSCSMIPLP HMHGPQFPCS SIPASLGLHG MPRSVNHQMF GFPGQGGPLS  600
IPRPSLFGSL SGLSARANSV PEITAPTTCP ISASDTAPTS IPVDQQQQNM EALHGSGIDD  660
SQIQTPNQAV KKLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403407KRRSH
2450455ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914796.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
TrEMBLA0A2H3Z4E30.0A0A2H3Z4E3_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRINGXP_008807920.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-39phytochrome interacting factor 3