PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914598.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 716aa    MW: 82027.2 Da    PI: 7.4743
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914598.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1781.9e-2479165190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YAk+ GFsvrk++ +++ r+g+i  r++vCs+eg+r  ++ +   +r++r+ +rt+C a+++ k ++d++w+v+k+  eHnH+la
  XP_010914598.1  79 SFYNSYAKRKGFSVRKDHLSRR-RDGSIRYRHYVCSNEGSRPAHRVH--MARKSRPIERTNCLARIEFKVNNDNVWVVNKFMDEHNHPLA 165
                     5****************99997.9999**************998877..99*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-2279165IPR004330FAR1 DNA binding domain
PfamPF105511.2E-29288381IPR018289MULE transposase domain
PROSITE profilePS509669.557556603IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4578605IPR006564Zinc finger, PMZ-type
PfamPF044346.5E-4579600IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MSRSEEGARK ETAVPNVSPT SIITNTNEMD RSVKNTNAMN GSIESANSTG GSLVPGATDN  60
SQIEPKVGMM FYSEDRAYSF YNSYAKRKGF SVRKDHLSRR RDGSIRYRHY VCSNEGSRPA  120
HRVHMARKSR PIERTNCLAR IEFKVNNDNV WVVNKFMDEH NHPLASPNNS HMLRSHRKKL  180
PVQRAVLTKL DCHGVKAAQL HNFQAEATHC TEDAGFVLRN QCNHLNTDRM RELDKGDAQF  240
LLEFLKAKQS ENPSFFYAIQ LDGKERLTNC FWADAQSVID YAYFGDAVTF DTTYRASGYD  300
IPFAPFIGIN NHKQIVIFGA ALLLDESEES FVWLLKTFLA AMSGKQPKTI FTDQCLAMSK  360
AITMCLPNTR HQFCLWHILQ NAPIHLPSVC NSEPHFHREF ENCIYAGGLE DDFHKKWENL  420
ITKYGLESNS WLKDLYAVRE QWALVYHGNS FSATMTTKQW AENMEGLFKI HFYRKLPFTK  480
FIIQYLKALV QLRDEELLED YESWHTKPVL FVEIPMLIEA AEAYTRVVYE DFEYEYKSQL  540
ACLCEPVGID GTVYTFRVYM PQKQGYGLVE FNPSDVVVAC SCKKFESMGI LCMHALKVLN  600
NNNILDLPSQ YILRRWTKDA KVEAVSNRHQ SAVASDNQAS LTLRYNHVCR KAIAIAVKSA  660
VSKDALDILE HGLDRFIAEM EKVLHNDSTG KQTDDVNVNS MPQNPLETNQ ILFQRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914594.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010914595.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010914596.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010914597.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010914598.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_019703959.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_019703960.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_029118811.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2H3Z6U30.0A0A2H3Z6U3_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008809267.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5