PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914540.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 316aa    MW: 35445.5 Da    PI: 6.1922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914540.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grW++eEdell +++k +G g+W++ ++  g+ R++k+c++rw +yl
   XP_010914540.1 14 KGRWSAEEDELLMKYIKAHGEGSWRSLPKNAGLPRCGKSCRLRWVNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding521.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e ++++   lG++ W+ Ia++++ gRt++++k++w+++l
   XP_010914540.1  67 RGNITQEEEETIIKLRSSLGNR-WSVIAKHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.815961IPR017930Myb domain
SuperFamilySSF466893.74E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002497.5E-151461IPR001005SANT/Myb domain
CDDcd001671.12E-91661No hitNo description
PROSITE profilePS5129424.20162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2565116IPR009057Homeodomain-like
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1467112IPR001005SANT/Myb domain
CDDcd001674.78E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWSAE EDELLMKYIK AHGEGSWRSL PKNAGLPRCG KSCRLRWVNY  60
LKTDLKRGNI TQEEEETIIK LRSSLGNRWS VIAKHLPGRT DNEIKNYWNS HLSRKIHSFH  120
DADGTRVIVG LTTIGSSGGK QKGGRTRRSA MKIGTTCWSK RKGNHERNGE HPISFVHDRE  180
GESMVCNLDH DKRSSTELVN LDEGVVFESG LIDFNEQMSP SLFVDSGFCT NNEIEGGLFG  240
ASHDSGTMNL SEERDAKDSI LNDDGEGVNP CSKEGREGEV VALDWEEMMC LEVDNFLNWE  300
GMWDGPREXV AMFMGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914540.20.0transcription factor MYB111 isoform X1
TrEMBLA0A2H3YDJ00.0A0A2H3YDJ0_PHODC; myb-related protein P
STRINGXP_008797192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-72myb domain protein 12