PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914517.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 153aa MW: 16581.8 Da PI: 10.7984 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62 | 7.2e-20 | 27 | 61 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++ XP_010914517.1 27 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKNRR 61 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.47E-13 | 20 | 61 | No hit | No description |
PROSITE profile | PS50114 | 13.086 | 21 | 59 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.4E-17 | 21 | 81 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-16 | 26 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.94E-14 | 26 | 75 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 27 | 52 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-17 | 27 | 61 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MDLLGEKETG SIDLSSGRES SGELKSCADC RTTKTPLWRG GPSGPKSLCN ACGIRYRKNR 60 RAALGHKEGE RRERKQKRED DGGSGSGSSS SSSRTTTTTK ELGGVSVKLR MLGLGSEVLV 120 KRRSTLERKR RRMGEVEQAA VLLMALSSGF LYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 131 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914517.1 | 1e-103 | GATA transcription factor 16 | ||||
TrEMBL | A0A2H3YDU7 | 2e-78 | A0A2H3YDU7_PHODC; GATA transcription factor 15-like | ||||
STRING | XP_008797161.1 | 3e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 9e-27 | GATA transcription factor 15 |