PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914409.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 768aa    MW: 85319.7 Da    PI: 6.3021
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914409.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23137238199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ k++a+e+       ++++   ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +
  XP_010914409.1 137 FCKILTASDTSTHGGFSVLKRHADEClppldmsQQPP--VQELVAKDLHGVEWSFRHIFRGQPKRHLLTTGWSTFVNAKKLVAGDAFIFL--SGE 227
                     99*****************************744444..458************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_010914409.1 228 NGELRVGVRRA 238
                     999*****996 PP
2Auxin_resp97.61.8e-32263343182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t+++F+v+Y Pr  ++eF+++++++++++k+++s+Gm+++m+fe+e+ +e r++Gt+++++d+dp  Wp+S+Wr+ 
  XP_010914409.1 263 ASHAITTGTMFSVYYWPRR-SPEFIIPYNQYVESTKNNYSIGMKVRMKFEGEEGQEERFTGTIISIEDADPATWPGSEWRCF 343
                     789***************7.89**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-37131265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40131250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-21135237No hitNo description
PfamPF023621.2E-21137238IPR003340B3 DNA binding domain
SMARTSM010199.3E-23137239IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998137239IPR003340B3 DNA binding domain
PfamPF065071.0E-30263344IPR010525Auxin response factor
SuperFamilySSF542779.81E-10649735No hitNo description
PROSITE profilePS5174520.28658740IPR000270PB1 domain
PfamPF023091.4E-5703743IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MMGSFGVAVG VGGSSCCSGA GDQGREDGDG HIDTELWRAC AGPLVTVPRV GEKVFYFPQG  60
HMEQVEAYTN QEANRQMPIY GLPYKILCRV VNVQLKAERD TDEVFAHVTL LPEHEDEGTS  120
KNEAVPTPIT KPCVRSFCKI LTASDTSTHG GFSVLKRHAD ECLPPLDMSQ QPPVQELVAK  180
DLHGVEWSFR HIFRGQPKRH LLTTGWSTFV NAKKLVAGDA FIFLSGENGE LRVGVRRAMR  240
QHASASASVI SGQSMQLGLL ASASHAITTG TMFSVYYWPR RSPEFIIPYN QYVESTKNNY  300
SIGMKVRMKF EGEEGQEERF TGTIISIEDA DPATWPGSEW RCFKVHWDDT STIMRPQRVS  360
PWNVFPFVAA AAPPSFIPPP KRRATPLSSP PDPSAPVRDG PLKVSNEPAP RLCEVLQGQE  420
NMVPTLGSIS DYLEQGTAHN LLSSQRMPPS SPDARRSNEL INSRRKMGLE EWTCSLRPRP  480
CYHDTYATSG ISETSWLDSY WQRRLPTVID LGATQVKSNR FQEMEICKSR DTVDNPTTEP  540
IPISNSLRKE HNVPNRFKEV EQSMCLETGE PSGVKPVSMI KLFGVELFEN HVGPMLSHVA  600
YSDELPISYN ALPVTVPHMA LSEPYVLSEP SKSTKPSECS VSDGFLAQSS TSQPVTARSC  660
TKVHKLGTAL GRSVDLSRFD GYESLIVELD QMFEFQGGLA DRSSGWQVIY ADDEGDIMMI  720
GDYPWLKFCS MVRKMYIYPK EEVKKLSTTQ LEELTAGKKT SCAYNVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1513536722355Auxin response factor 1
4ldw_A1e-1513536722355Auxin response factor 1
4ldw_B1e-1513536722355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914409.10.0auxin response factor 24 isoform X2
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A2H3ZHU20.0A0A2H3ZHU2_PHODC; Auxin response factor
STRINGXP_008813739.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-175auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]