PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914408.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 770aa    MW: 85575.9 Da    PI: 6.3021
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914408.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23139240199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ k++a+e+       ++++   ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +
  XP_010914408.1 139 FCKILTASDTSTHGGFSVLKRHADEClppldmsQQPP--VQELVAKDLHGVEWSFRHIFRGQPKRHLLTTGWSTFVNAKKLVAGDAFIFL--SGE 229
                     99*****************************744444..458************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_010914408.1 230 NGELRVGVRRA 240
                     999*****996 PP
2Auxin_resp97.61.8e-32265345182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t+++F+v+Y Pr  ++eF+++++++++++k+++s+Gm+++m+fe+e+ +e r++Gt+++++d+dp  Wp+S+Wr+ 
  XP_010914408.1 265 ASHAITTGTMFSVYYWPRR-SPEFIIPYNQYVESTKNNYSIGMKVRMKFEGEEGQEERFTGTIISIEDADPATWPGSEWRCF 345
                     789***************7.89**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-40133252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-37133267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-21137239No hitNo description
PfamPF023621.2E-21139240IPR003340B3 DNA binding domain
SMARTSM010199.3E-23139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998139241IPR003340B3 DNA binding domain
PfamPF065071.0E-30265346IPR010525Auxin response factor
SuperFamilySSF542779.81E-10651737No hitNo description
PROSITE profilePS5174520.28660742IPR000270PB1 domain
PfamPF023091.4E-5705745IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MMGSFGVAVG VGGSSCCSGA GDQGREDGDG HIDTELWRAC AGPLVTVPRV GEKVFYFPQG  60
HMEQVEAYTN QEANRQMPIY GLPYKILCRV VNVQLKAERD TDEVFAHVTL LPEHEQQDEG  120
TSKNEAVPTP ITKPCVRSFC KILTASDTST HGGFSVLKRH ADECLPPLDM SQQPPVQELV  180
AKDLHGVEWS FRHIFRGQPK RHLLTTGWST FVNAKKLVAG DAFIFLSGEN GELRVGVRRA  240
MRQHASASAS VISGQSMQLG LLASASHAIT TGTMFSVYYW PRRSPEFIIP YNQYVESTKN  300
NYSIGMKVRM KFEGEEGQEE RFTGTIISIE DADPATWPGS EWRCFKVHWD DTSTIMRPQR  360
VSPWNVFPFV AAAAPPSFIP PPKRRATPLS SPPDPSAPVR DGPLKVSNEP APRLCEVLQG  420
QENMVPTLGS ISDYLEQGTA HNLLSSQRMP PSSPDARRSN ELINSRRKMG LEEWTCSLRP  480
RPCYHDTYAT SGISETSWLD SYWQRRLPTV IDLGATQVKS NRFQEMEICK SRDTVDNPTT  540
EPIPISNSLR KEHNVPNRFK EVEQSMCLET GEPSGVKPVS MIKLFGVELF ENHVGPMLSH  600
VAYSDELPIS YNALPVTVPH MALSEPYVLS EPSKSTKPSE CSVSDGFLAQ SSTSQPVTAR  660
SCTKVHKLGT ALGRSVDLSR FDGYESLIVE LDQMFEFQGG LADRSSGWQV IYADDEGDIM  720
MIGDYPWLKF CSMVRKMYIY PKEEVKKLST TQLEELTAGK KTSCAYNVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1523536922355Auxin response factor 1
4ldw_A1e-1523536922355Auxin response factor 1
4ldw_B1e-1523536922355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914408.10.0auxin response factor 24 isoform X1
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A2H3ZH150.0A0A2H3ZH15_PHODC; Auxin response factor
STRINGXP_008813739.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-176auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]