PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | SBP | ||||||||
Protein Properties | Length: 831aa MW: 92372.6 Da PI: 5.6122 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.4 | 3e-36 | 139 | 215 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead+ e+k yh+rh+vC ++ ap+v+++g+ +r+CqqC++fh l++fDe+krsCrr+L++hn+rrr++ XP_010914363.1 139 RCQVPGCEADIGELKGYHQRHRVCLRCAYAPSVVLDGEPKRYCQQCGKFHILTDFDEGKRSCRRKLERHNKRRRRRP 215 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-29 | 136 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.368 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-34 | 138 | 218 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-27 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
MENSDGVAGE GAEPGPAVTT TVTAALEWGG LLDFTIYDDG PLFLPWDGLE DRPQDDAAAA 60 APPPLPPPRA AGSVDRVRKR DVRLVCSNYL EGRIPCSCPE AEEAAGDEGE GAEVAVPGVE 120 SSKGKKRART GGPSIGPLRC QVPGCEADIG ELKGYHQRHR VCLRCAYAPS VVLDGEPKRY 180 CQQCGKFHIL TDFDEGKRSC RRKLERHNKR RRRRPTDLIN IVEEDKEHQG DISVDDNCAG 240 KPRKDGFACG TVETAVSNKL RERETLLESE DGHGSPFHSL SSFNNVHSNS IMSFTTSDEA 300 QIDEKIDNSQ SGLSTFCDNK SGYSSVCPTG RISFKLYDWN PADFPRRLRH QIFQWLASMP 360 VELEGYIRPG CTMLTVFIAM PHFMWEKLSQ DAAGYVKDLV CAPESLFLGR GNIHIYLNNN 420 IIQVLEDATL LNSIRMEVQV PRLHYVFPTF FEAGKPMEFI ACGSYLDQPK FRFLVSFAGK 480 YLSLESCHAM CHKKISECSG NGVGSISSTE HEVFRINITQ TDSEIFGPAF IEVENESGIS 540 NFVPILFGNK HICSQLKRMH GAFSESLCAD SSISQTIDTV ANPGFCKALV LKQNSISELL 600 LDIAWLLKEP RLEETETLLS STNIHRLTCL LRFLIQNEAF IFLEEILHFL DVIDWEGLDD 660 RVDKALDVDL RLFLNYMNHA REILHQRIPH DGKSELDIID SISRASMPQS YAMNDGNNAV 720 PCLNQSMERR DKDGSGSTTT PATQANDETV PLLTRDGISG QICRLNSGTR WTSESWGIFP 780 STRTSIRAAL FITGSVVLCF VACVALFHPH MAGEFADSLR RLLLTSRKTW N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-42 | 139 | 217 | 5 | 83 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 214 | KRSCRRKLERHNKRRRRRP |
2 | 200 | 212 | RRKLERHNKRRRR |
3 | 208 | 213 | KRRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914363.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X2 | ||||
TrEMBL | A0A2H3ZGT7 | 0.0 | A0A2H3ZGT7_PHODC; squamosa promoter-binding-like protein 9 isoform X1 | ||||
STRING | XP_008813644.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 1e-164 | squamosa promoter binding protein-like 7 |