PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913938.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 389aa MW: 41989.9 Da PI: 7.6267

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913938.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	230	277	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq XP_010913938.1 230 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 277 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.57E-9	224	281	No hit	No description
SuperFamily	SSF47459	5.23E-15	224	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-14	226	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.526	226	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-6	230	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-8	232	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MEPTRSSDAG SGNSGTYTPE IAESIRFEEE IQSLMRENTM HPGLEPPPVG GGGSSFTALL 60 GLPANQAVEL LHEPESEESP AVAIASASGG EMWRFRLRDP KALTLPSGCS PTFPSNAALV 120 ERAARLSVFA TEDSPEAASV PSHSGDRSTK PKAEPADSDS QPICPIPGER PQRPAKRKEA 180 DKGNKVKGPA KKTKSAEEGS AKGAEENTSG SGEKLPYVHV RARRGQATDS HSLAERARRE 240 KINARMKLLQ ELVPGCSKIS GTALVLDEII NHVQSLQRQV EVLSMRLAAV NPRIDFSGLD 300 SFLSAECGRV TVGDGRCGGG MEQSAWMEAT AVNEGRRQQQ QIWHVDSVHP HPTPSVWERV 360 DSPHLFINPG TSLFGYDPSN SGKRRRRRR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MEPTRSSDAG SGNSGTYTPE IAESIRFEEE IQSLMRENTM HPGLEPPPVG GGGSSFTALL  60
GLPANQAVEL LHEPESEESP AVAIASASGG EMWRFRLRDP KALTLPSGCS PTFPSNAALV  120
ERAARLSVFA TEDSPEAASV PSHSGDRSTK PKAEPADSDS QPICPIPGER PQRPAKRKEA  180
DKGNKVKGPA KKTKSAEEGS AKGAEENTSG SGEKLPYVHV RARRGQATDS HSLAERARRE  240
KINARMKLLQ ELVPGCSKIS GTALVLDEII NHVQSLQRQV EVLSMRLAAV NPRIDFSGLD  300
SFLSAECGRV TVGDGRCGGG MEQSAWMEAT AVNEGRRQQQ QIWHVDSVHP HPTPSVWERV  360
DSPHLFINPG TSLFGYDPSN SGKRRRRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	387	KRRRRR
2	382	388	KRRRRRR
3	383	388	RRRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913938.1	0.0	transcription factor bHLH48 isoform X3
TrEMBL	A0A2H3XQI9	0.0	A0A2H3XQI9_PHODC; transcription factor bHLH48-like isoform X2
TrEMBL	A0A2H3XQY0	0.0	A0A2H3XQY0_PHODC; transcription factor bHLH48-like isoform X3
TrEMBL	A0A3Q0HYV9	0.0	A0A3Q0HYV9_PHODC; transcription factor bHLH48-like isoform X1
STRING	XP_008787267.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	6e-67	bHLH family protein