PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 41989.9 Da PI: 7.6267 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 230 | 277 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq XP_010913938.1 230 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 277 8*************************9....788889999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.57E-9 | 224 | 281 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-15 | 224 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 226 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.526 | 226 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 230 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 232 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEPTRSSDAG SGNSGTYTPE IAESIRFEEE IQSLMRENTM HPGLEPPPVG GGGSSFTALL 60 GLPANQAVEL LHEPESEESP AVAIASASGG EMWRFRLRDP KALTLPSGCS PTFPSNAALV 120 ERAARLSVFA TEDSPEAASV PSHSGDRSTK PKAEPADSDS QPICPIPGER PQRPAKRKEA 180 DKGNKVKGPA KKTKSAEEGS AKGAEENTSG SGEKLPYVHV RARRGQATDS HSLAERARRE 240 KINARMKLLQ ELVPGCSKIS GTALVLDEII NHVQSLQRQV EVLSMRLAAV NPRIDFSGLD 300 SFLSAECGRV TVGDGRCGGG MEQSAWMEAT AVNEGRRQQQ QIWHVDSVHP HPTPSVWERV 360 DSPHLFINPG TSLFGYDPSN SGKRRRRRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 382 | 387 | KRRRRR |
2 | 382 | 388 | KRRRRRR |
3 | 383 | 388 | RRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913938.1 | 0.0 | transcription factor bHLH48 isoform X3 | ||||
TrEMBL | A0A2H3XQI9 | 0.0 | A0A2H3XQI9_PHODC; transcription factor bHLH48-like isoform X2 | ||||
TrEMBL | A0A2H3XQY0 | 0.0 | A0A2H3XQY0_PHODC; transcription factor bHLH48-like isoform X3 | ||||
TrEMBL | A0A3Q0HYV9 | 0.0 | A0A3Q0HYV9_PHODC; transcription factor bHLH48-like isoform X1 | ||||
STRING | XP_008787267.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 6e-67 | bHLH family protein |