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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_010913902.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
C3H |
| Protein Properties |
Length: 298aa MW: 31062.6 Da PI: 9.8037 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010913902.1 | genome | OG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28.1 | 3.5e-09 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck+G++C+FaHg+
XP_010913902.1 102 KTRLCNKYNTAEGCKFGEKCHFAHGE 127
8***********************96 PP
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| 2 | zf-CCCH | 37 | 5.5e-12 | 265 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
XP_010913902.1 265 FKTKLCENFAK-GACTFGDRCHFAHG 289
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 4.8 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-5 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.3E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.6 | 42 | 59 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 96 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0038 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.648 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-8 | 100 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.5E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 9.79E-16 | 164 | 243 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 3.2E-11 | 170 | 240 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.278 | 171 | 235 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 7.4E-16 | 171 | 239 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.70E-14 | 173 | 235 | No hit | No description |
| Pfam | PF00013 | 3.6E-11 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-16 | 263 | 295 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.8E-8 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.558 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.55E-9 | 264 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-9 | 265 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
METARKRGRL DATNGGAAGP KRLKEMESFQ HGLGSKSKPC TKFFSTAGCP FGEGCHFLHY 60
VPGGIQAVAQ MTNLGNPAVP PSVRNPMVPP AFSDGPPGPA VKTRLCNKYN TAEGCKFGEK 120
CHFAHGEREL GKPIIPSQDG PIAPPTGGRL AGRLEPPPPA GLPAAASFGA SATAKISVDA 180
SLAGAIIGKG GVNTKQICRI TGVRLAIRDH ESDPNLRNIE LEGTFDQIKN ASAMVRELIV 240
NISSMTSLPV KNPAVVAPAG SGNNFKTKLC ENFAKGACTF GDRCHFAHGA SELRKAAA
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