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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26751.4 Da PI: 4.2957 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 57 | 99 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ +++ Lr+++P+ +K++ a+i + A++YI++Lq XP_010913729.1 57 MERNRRKKVQEKLYALRSVVPNI-----TKMDRASIIKDAIDYIQQLQ 99 8*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.684 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 54 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-14 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-15 | 56 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.17E-12 | 56 | 103 | No hit | No description |
Pfam | PF00010 | 7.3E-9 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.1E-4 | 163 | 232 | No hit | No description |
SuperFamily | SSF55021 | 5.34E-6 | 163 | 232 | No hit | No description |
PROSITE profile | PS51671 | 11.144 | 165 | 236 | IPR002912 | ACT domain |
CDD | cd02116 | 4.01E-4 | 166 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDAMDCEYKN YWETKTFLEA EELHSSSWII DEAMSQCFSC SSSLAATSST PPKYLVMERN 60 RRKKVQEKLY ALRSVVPNIT KMDRASIIKD AIDYIQQLQE QEKMLLSEIS ELELFNEFTE 120 IIYDMEQDDV AQTSPEQPLA PGSPFMPSIE LLELKVFAVG NKNFSISFTC NKKRDALIKM 180 CEVFASLNLN IITANITSSS ESLSHMLFIE TDESDGSGLK EKIEAAIAEL DVPRNP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913729.1 | 1e-174 | transcription factor bHLH35 isoform X1 | ||||
TrEMBL | A0A3Q0HXI3 | 1e-122 | A0A3Q0HXI3_PHODC; transcription factor bHLH35-like isoform X1 | ||||
STRING | XP_008781924.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 5e-58 | bHLH family protein |