PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913682.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 396aa    MW: 42896.8 Da    PI: 8.8323
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913682.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.92.5e-42154230177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC+adls ak+yhrrhkvCe+hska+vv++ gl+qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk+q
  XP_010913682.1 154 RCQAEGCKADLSGAKHYHRRHKVCEFHSKATVVIAGGLQQRFCQQCSRFHVLTEFDEAKRSCRKRLADHNRRRRKPQ 230
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-35149216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.83152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-40153232IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31155228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMNRANSAEA YIPSMMPVVG LEGSSQKLHL WDYDTTTPLH NHPTATAIPP AATTALALDY  60
HQPFFPTSSF VDCPPSLLSV NSFPFYSPHL PHYTAAALVK REDCDSAAAG GGGAGKIGLN  120
LGHRTYFSSG DALAIDRLFA RSRGMYSLNH QPPRCQAEGC KADLSGAKHY HRRHKVCEFH  180
SKATVVIAGG LQQRFCQQCS RFHVLTEFDE AKRSCRKRLA DHNRRRRKPQ LPAANADSSA  240
PENPTTNSME KSKQTAKAPR DNSTAKSTAT ISNASTSLEG QQGYSNKATQ LRTAPALSLG  300
GVGAVEKRGM GSSSAMCQSQ GHFVAMTEEK VSPQQQHFFS SPEATSGTFF HHHNLFCSSS  360
NEASQSTGGA SGDTTSHHRQ SNLLHLGQTI FEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301552281184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211228KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913682.10.0squamosa promoter-binding-like protein 10
RefseqXP_010913683.10.0squamosa promoter-binding-like protein 10
TrEMBLA0A2H3XD400.0A0A2H3XD40_PHODC; squamosa promoter-binding-like protein 10
STRINGXP_008781929.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-52squamosa promoter binding protein-like 8