PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913438.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 276aa MW: 32614.8 Da PI: 10.1173

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913438.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.8e-17	24	107	12	98
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++rl +p +f++ + +k e+ t +l+++ g+sW vk+ ++ + +++++GW++F+ a++L +g +vFk++g++ef +v++f+ XP_010913438.1 24 FLDRLHIPHDFIRYFiRKKVEKADTAVLRSPLGKSWHVKV--HGNFKDMYFGEGWQDFAVAHDLSVGFLLVFKYKGNMEF--KVTIFD 107 4689******665955556778************..9999999*************************9999..999987 PP
2	B3	48.4	1.7e-15	178	276	3	99
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 k+ +++++lk+ + +p f ++++++++ ++++l+d++ + W v+l +r++ + + +++GW+eF n+LkegD+++F+ + ++++ ++ XP_010913438.1 178 KAIIKHYNLKLkPYMNVPTIFQASYSLSSK--RQVILRDPQWQLWPVRLYHRRRNTMvqTHFGSGWREFHMYNNLKEGDTCIFEIIpEDQNDIMH 270 66677777777446889999988854..47*************65555555668899******************9955588889 PP EEEE-S CS B3 94 vkvfrk 99 v++frk XP_010913438.1 271 VHIFRK 276 ***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-22	12	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.084	13	109	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.7E-22	14	116	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.6E-19	16	109	IPR003340	B3 DNA binding domain
CDD	cd10017	9.15E-21	16	107	No hit	No description
Pfam	PF02362	7.9E-15	25	107	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.29E-19	175	275	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.34E-14	175	275	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.0E-20	175	275	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.83	177	276	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-4	177	276	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-12	179	276	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MPNKKPKQEG QNGTQFFKIL LPGFLDRLHI PHDFIRYFIR KKVEKADTAV LRSPLGKSWH 60 VKVHGNFKDM YFGEGWQDFA VAHDLSVGFL LVFKYKGNME FKVTIFDLSA CEKEYNPFHA 120 NCSSDIDRRP ISGSSEQLVA EHKKFIAYLN RQVAIRDFKP VKKVYETRSC CSLGPHFKAI 180 IKHYNLKLKP YMNVPTIFQA SYSLSSKRQV ILRDPQWQLW PVRLYHRRRN TMVQTHFGSG 240 WREFHMYNNL KEGDTCIFEI IPEDQNDIMH VHIFRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913438.1	0.0	B3 domain-containing protein Os03g0212300 isoform X3
TrEMBL	A0A2H3ZUD9	1e-177	A0A2H3ZUD9_PHODC; B3 domain-containing protein Os03g0212300-like
STRING	XP_008798035.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	7e-26	B3 family protein