PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913310.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 476aa    MW: 51713.5 Da    PI: 5.7266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913310.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059139158221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C  Cgk+F++   L  H+r
  XP_010913310.1 139 TCVECGKTFPSLKALYGHLR 158
                     6*****************98 PP
2zf-C2H214.97.4e-05336358123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+ksF ++  L  H  +H
  XP_010913310.1 336 YRCSICNKSFATHQALGGHRASH 358
                     9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-4135160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.38E-10136160No hitNo description
PROSITE profilePS501579.432138160IPR007087Zinc finger, C2H2
SMARTSM003550.13138160IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-7140162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-10331358No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4334362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-9335359IPR007087Zinc finger, C2H2
SMARTSM003550.0049336358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427336363IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
SMARTSM003550.11402424IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-11402425IPR007087Zinc finger, C2H2
PROSITE patternPS000280404424IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGAHPMDGES YYQSEAAALG QEDGSVAAKQ KLAKNSLQSP CKFPKAGELD EEVARQVLSS  60
DLSLQGASDG DVRAHYISNG ELADDRDKHI ESPTHHHGDD VGFLVKMEED VADKVVAEDS  120
GSSESKKEDA NIAAEKPPTC VECGKTFPSL KALYGHLRCH PQRGYRGANR PPEAKNKLQI  180
GVDSSSDRVL PAAKWSVTAK RGRKGIIIDS NDPEVNAANI LLQLSRDSNL GPTPNLPQEI  240
DELRARDRKS ILVNIRIEMD KKAAEVEEGL QLMDAMHSEY MVGNEDEYTD EMKADNDGNA  300
GSSRRLLVFE RKVKKKKIKD LEPANESIPP TRGRRYRCSI CNKSFATHQA LGGHRASHNK  360
NKNNSEVVVA MDETEDGDPV HAEASTLVDS NSAVPRAATA EHRCTLCQAT FPTGQALGGH  420
KRRHWNGPVN HPPLSPPAAS TAAPSPAPLS ESPTEANKGL LDIDLNELPN FEAEEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303316RRLLVFERKVKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913310.10.0zinc finger protein ZAT4-like
TrEMBLA0A2H3YYV21e-161A0A2H3YYV2_PHODC; zinc finger protein ZAT9-like
STRINGXP_008805550.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-18C2H2 family protein