PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913307.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 122aa    MW: 13402.1 Da    PI: 4.7941
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913307.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.75.4e-5626119295
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     +eqdrflPian++rim+k++P+n+ki+kdake+vqecvsefisfvtseasdkcqrekrktingddllwa++tlGfedyveplk+yl+ yre+e 
  XP_010913307.1  26 KEQDRFLPIANIGRIMRKAIPENGKIAKDAKESVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLQLYREMEY 119
                     89******************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5024118IPR009072Histone-fold
SuperFamilySSF471133.57E-3828118IPR009072Histone-fold
PfamPF008081.3E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.7E-217896No hitNo description
PRINTSPR006156.7E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAESGAPGTP ESGHSGDHGG PSGGAKEQDR FLPIANIGRI MRKAIPENGK IAKDAKESVQ  60
ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMGTLGF EDYVEPLKLY LQLYREMEYS  120
GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4826116393NF-YB
4awl_B1e-4826116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4826116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913307.14e-87nuclear transcription factor Y subunit B-3 isoform X2
SwissprotP252093e-59NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2H3Y0333e-73A0A2H3Y033_PHODC; nuclear transcription factor Y subunit B-4-like isoform X1
TrEMBLA0A2H3Y0413e-73A0A2H3Y041_PHODC; nuclear transcription factor Y subunit B-4-like isoform X2
TrEMBLA0A2H3Y0L03e-73A0A2H3Y0L0_PHODC; nuclear transcription factor Y subunit B-4-like isoform X3
STRINGXP_008791402.13e-74(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.35e-58nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]