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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31105.9 Da PI: 5.4141 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l++ + G ++W+++++ g+ R++k+c++rw +yl XP_010913029.1 14 RGPWTVEEDQKLINFIMNNGIHCWRLVPKLAGLMRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ ++++++ lG++ W++Ia++++ gRt++++k++w++ XP_010913029.1 67 RGAFSEDEENQIIQLHSCLGNR-WSKIASYFP-GRTDNEIKNHWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.863 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.59E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.73E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.998 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRQPCCDKI GLKRGPWTVE EDQKLINFIM NNGIHCWRLV PKLAGLMRCG KSCRLRWTNY 60 LRPDLKRGAF SEDEENQIIQ LHSCLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLKLLG 120 LDPVTHKPIE QPAKYDSSRS DCVSESNPSE VQEKSMEIMD IVSSSQEEHL MDDEKQKGQE 180 EHLMNDEKQK EVQFGSNNTI VLHGNGMSWE SLDVEEMKPQ TNPSSSFSTS FSVDDTGHAG 240 SSLCWFDTID SFPSWEALYP LEDVFPFGNF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913029.1 | 0.0 | myb-related protein 315-like | ||||
TrEMBL | A0A2H3Z206 | 1e-143 | A0A2H3Z206_PHODC; protein ODORANT1 | ||||
STRING | XP_008807214.1 | 1e-143 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 4e-79 | myb domain protein 40 |