PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912827.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 355aa MW: 37728.8 Da PI: 7.9063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912827.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	289	334	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ ++ + a++L +A ++IksLq XP_010912827.1 289 SIAERERRTRISDRLKKLQELVPNM----DEQTNTADMLDLAFQHIKSLQ 334 689*******************7....799***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.119	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-15	286	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.41E-12	287	338	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-14	288	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-12	289	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	289	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MNQSPPKGSK GMAMFATAPR PPALARNGSA PGSLLTGIAD SVGGGRGEFQ MGRLFSLGSP 60 CLTSESTCKA GAATSSPNPP PYRNNDGGGV GSGLPRSYGV GEISVGDLPP APAAVEGNSR 120 GGGNPLTRHS SSPAGFLSHL MVDNVTGDTG SYSQQGTDGV YAMGSRGLSS QLSFFRQRTL 180 SQISEISIPD TGESVSGSNN SNETSRNVGQ SYISSNFSIG SWDDMNSIMF SAPPNKQAKN 240 HDGDVITRHS SIESQFSLPT TSLEFLQIQQ DQVPFKARAK RGCATHPRSI AERERRTRIS 300 DRLKKLQELV PNMDEQTNTA DMLDLAFQHI KSLQSQVQIL TQERENCICA SKQEN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MNQSPPKGSK GMAMFATAPR PPALARNGSA PGSLLTGIAD SVGGGRGEFQ MGRLFSLGSP  60
CLTSESTCKA GAATSSPNPP PYRNNDGGGV GSGLPRSYGV GEISVGDLPP APAAVEGNSR  120
GGGNPLTRHS SSPAGFLSHL MVDNVTGDTG SYSQQGTDGV YAMGSRGLSS QLSFFRQRTL  180
SQISEISIPD TGESVSGSNN SNETSRNVGQ SYISSNFSIG SWDDMNSIMF SAPPNKQAKN  240
HDGDVITRHS SIESQFSLPT TSLEFLQIQQ DQVPFKARAK RGCATHPRSI AERERRTRIS  300
DRLKKLQELV PNMDEQTNTA DMLDLAFQHI KSLQSQVQIL TQERENCICA SKQEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019703639.1	0.0	transcription factor bHLH128 isoform X4
TrEMBL	A0A2H3Y114	0.0	A0A2H3Y114_PHODC; transcription factor bHLH128 isoform X2
STRING	XP_008791727.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-51	bHLH family protein