PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912820.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 732aa    MW: 78250.8 Da    PI: 6.4395
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912820.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-15301360155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010912820.1 301 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 360
                     57*******************666664478446*************************98 PP
2AP246.68.5e-15403454155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010912820.1 403 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 454
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-22301370No hitNo description
PfamPF008476.2E-12301360IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17301370IPR016177DNA-binding domain
PROSITE profilePS5103219.23302368IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-16302369IPR001471AP2/ERF domain
SMARTSM003801.2E-29302374IPR001471AP2/ERF domain
PRINTSPR003674.0E-6303314IPR001471AP2/ERF domain
CDDcd000181.14E-24403464No hitNo description
SuperFamilySSF541711.18E-17403464IPR016177DNA-binding domain
PfamPF008471.1E-9403454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18404463IPR001471AP2/ERF domain
PROSITE profilePS5103219.045404462IPR001471AP2/ERF domain
SMARTSM003801.5E-33404468IPR001471AP2/ERF domain
PRINTSPR003674.0E-6444464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MASINNWLGF SLSPQELPPS QPHQSSALIP GDEVSADCYG LSTDPTSATP LGIPTLRPDG  60
SFGILEALNR PNSHPQDWSM KGLDFKGSSS ELSILVGSSS NQNNMDHDEP KLEDFLGGNS  120
FSDHDQKLPP GCSSIPGTYD NSGDYMFSNC SLQLPAAASM ASNGGNNGGL MNNNGTGASG  180
SNSIGLSMIK TWLRNQPAPL HHPEGNNNMD STGTSNCGGG ALEGSVGGPM ASSQSLSLSM  240
STGSQSSSAL PLLAAAASGG GESSSSENKQ KGSGSSLDGQ STGAIEAVPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  360
PTTTTNFPIS NYEKELEEMK HMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  420
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESSTLPIG  480
GAAKRLKDVS EHTEASVDGR RTDDDNLTSQ LTDGISSSYA SHAHHHGWPP FAFPQAQPIA  540
MHYPYGQQRG WCKQEQDSVM ATAHTLQDLQ QLHLGNNTHN FFQPSVIHNL ISMDSSSMEH  600
STGSNSVVYN GSMAGSSGSY QGVVGGSGRY ALPVSTMVVD QSQGNQGSSS FGENEGKAIG  660
YENMLGSTDP YGGRSVYYLS QQSSGGVVKD NGYDQSGGCN TWMQPSVQAI APRANNVAVC  720
HGAPLFTVWN DA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912820.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-146BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2H3Y0T50.0A0A2H3Y0T5_PHODC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008791735.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-127AP2 family protein