PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912788.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 168aa    MW: 17860.4 Da    PI: 10.4767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912788.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00036701051454
                     HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     d+i ++ ++L++l+ +      +K + a++L++A+ YIk L
  XP_010912788.1  70 DKIGERVAKLQQLVSPF-----GKSDTASVLQEATGYIKFL 105
                     57778889999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.30956105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-766115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1066119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-467110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MMMMTEVAVQ KRRSHDSFLL SNIAGADGGH SHSSSITTTT TTCNGLTAKR LKTSGGGGGA  60
GMISTKEKKD KIGERVAKLQ QLVSPFGKSD TASVLQEATG YIKFLHDQLQ VLSGPYMQRT  120
RPTGKIQEAE HCSLRSRGLC LMPISSALGI ARSNGADLWA PAGSIRQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014KRRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118435.11e-122transcription factor bHLH153 isoform X2
SwissprotQ7XJU21e-40BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2H3Y1614e-96A0A2H3Y161_PHODC; transcription factor bHLH153-like isoform X2
STRINGXP_008791781.11e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-42bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]