PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912719.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ZF-HD

Protein Properties

Length: 276aa MW: 30289.5 Da PI: 8.2497

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912719.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.3	7.8e-33	74	130	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 v+Y+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHR+ev+ e XP_010912719.1 74 VVKYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEVDGE 130 589***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-24	75	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.2E-30	75	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.2E-31	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.278	77	126	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.07E-20	199	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-31	200	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.6E-27	207	263	IPR006455	Homeodomain, ZF-HD class
CDD	cd00086	0.00556	208	261	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDLSGHEGEI PIPITSAYIG SHGQSHGHTI IHDTPPLLHH PSNGPPPPPP LPTAASEDHQ 60 HHPANPYSSK KGVVVKYREC LKNHAASIGG NATDGCGEFM PSGEEGTLEA LKCSACNCHR 120 NFHRKEVDGE ASSCDCFHYL KERKVLGQKG LLISGPEAFG YAAATNSLIS RPSPHHMIMP 180 LGALQTSESD EMEGVGGGAM VRPPMVKKRF RTKFTPEQKE KMLSFAEKVG WRLQKQEESV 240 VQQLCQEIGV KRRVLKVWMH NNKHNLAKKS PPLQLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	208	265	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912718.1	0.0	zinc-finger homeodomain protein 4
Refseq	XP_010912720.1	0.0	zinc-finger homeodomain protein 4
Refseq	XP_029118422.1	0.0	zinc-finger homeodomain protein 4
Swissprot	O64722	7e-74	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A2H3Z6U7	1e-170	A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRING	XP_008808961.1	1e-171	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	8e-77	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]