PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912519.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 321aa    MW: 36277.4 Da    PI: 7.1201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912519.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00112951323
                    ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                    C+   Cgk+F +   L++H   H
  XP_010912519.1 29 CSyeGCGKTFIDVGALRKHAHIH 51
                    77779**************8877 PP
2zf-C2H217.11.6e-055680123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    y+C+   Cgk F ++s LkrH  tH
  XP_010912519.1 56 YVCHfeGCGKKFLDSSKLKRHFLTH 80
                    9********************9998 PP
3zf-C2H2219.1e-0786110123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk Fs   nLk H++tH
  XP_010912519.1  86 FICPheGCGKAFSLDFNLKAHMKTH 110
                     78**********************9 PP
4zf-C2H211.30.0011116140123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk +++   Lk+Hi+ H
  XP_010912519.1 116 HICPypECGKKYTHECKLKSHIKAH 140
                     679999*****************96 PP
5zf-C2H216.32.7e-05179204123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   Cgk + + + L+ H+r+ H
  XP_010912519.1 179 YACPyeGCGKAYIHEYKLNLHLRReH 204
                     89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-132253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00422751IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5542756IPR007087Zinc finger, C2H2
PROSITE patternPS0002802951IPR007087Zinc finger, C2H2
SuperFamilySSF576674.26E-83080No hitNo description
Gene3DG3DSA:3.30.160.601.2E-145476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00325680IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.8795685IPR007087Zinc finger, C2H2
PROSITE patternPS0002805880IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-1367119No hitNo description
Gene3DG3DSA:3.30.160.604.5E-1977113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-486110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19686115IPR007087Zinc finger, C2H2
PROSITE patternPS00028088110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-7114140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45116145IPR007087Zinc finger, C2H2
SMARTSM003550.13116140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-10174202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.69E-6174202No hitNo description
SMARTSM003550.0029179204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99179209IPR007087Zinc finger, C2H2
PROSITE patternPS000280181204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLKTLREKSK EPQAEEPKAE PTTEVLFLCS YEGCGKTFID VGALRKHAHI HGERQYVCHF  60
EGCGKKFLDS SKLKRHFLTH TGERDFICPH EGCGKAFSLD FNLKAHMKTH SLENYHICPY  120
PECGKKYTHE CKLKSHIKAH HEKNSVIDGM KHAPPAEKLH STPKTATAAY GSASSERPYA  180
CPYEGCGKAY IHEYKLNLHL RREHPGHNAE ENGKHAPAAD HVMDEASDHD AYIVKGGSVG  240
KNNKRSSKTN LVQKMPPAKM VNRKGSNLAS VNVSSVKKRW SSKEVYEEDS EETEEDRDNV  300
EEDGWRYRGT NGDDEETEDE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-34201402118PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912518.10.0zinc finger transcription factor YY1 isoform X1
RefseqXP_010912519.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-107YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2H3Z2W60.0A0A2H3Z2W6_PHODC; zinc finger transcription factor YY1-like isoform X2
TrEMBLA0A2H3Z3470.0A0A2H3Z347_PHODC; zinc finger transcription factor YY1-like isoform X1
STRINGXP_008807673.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-104C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]