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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 42252.2 Da PI: 7.1362 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 79 | 101 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_010912518.1 79 CSyeGCGKTFIDVGALRKHAHIH 101 77779**************8877 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 106 | 130 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH tH XP_010912518.1 106 YVCHfeGCGKKFLDSSKLKRHFLTH 130 9********************9998 PP | |||||||
3 | zf-C2H2 | 20.7 | 1.1e-06 | 136 | 160 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nLk H++tH XP_010912518.1 136 FICPheGCGKAFSLDFNLKAHMKTH 160 78**********************9 PP | |||||||
4 | zf-C2H2 | 11.1 | 0.0013 | 166 | 190 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk +++ Lk+Hi+ H XP_010912518.1 166 HICPypECGKKYTHECKLKSHIKAH 190 679999*****************96 PP | |||||||
5 | zf-C2H2 | 16.1 | 3.2e-05 | 229 | 254 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp Cgk + + + L+ H+r+ H XP_010912518.1 229 YACPyeGCGKAYIHEYKLNLHLRReH 254 89*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-13 | 72 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.554 | 77 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 77 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.14E-8 | 80 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-14 | 104 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.879 | 106 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 106 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 108 | 130 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.26E-13 | 117 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-19 | 127 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.196 | 136 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.5E-4 | 136 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 164 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.45 | 166 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 166 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-9 | 224 | 252 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.26E-6 | 224 | 252 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 229 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 229 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 231 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDLQTNHSMF ERRPPDKDRT PAVRWFREWV PQEVAATGGK CYLLKWVTED MLKTLREKSK 60 EPQAEEPKAE PTTEVLFLCS YEGCGKTFID VGALRKHAHI HGERQYVCHF EGCGKKFLDS 120 SKLKRHFLTH TGERDFICPH EGCGKAFSLD FNLKAHMKTH SLENYHICPY PECGKKYTHE 180 CKLKSHIKAH HEKNSVIDGM KHAPPAEKLH STPKTATAAY GSASSERPYA CPYEGCGKAY 240 IHEYKLNLHL RREHPGHNAE ENGKHAPAAD HVMDEASDHD AYIVKGGSVG KNNKRSSKTN 300 LVQKMPPAKM VNRKGSNLAS VNVSSVKKRW SSKEVYEEDS EETEEDRDNV EEDGWRYRGT 360 NGDDEETEDE D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 3e-33 | 70 | 190 | 2 | 118 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912518.1 | 0.0 | zinc finger transcription factor YY1 isoform X1 | ||||
Swissprot | Q2V3L3 | 1e-132 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A2H3Z347 | 0.0 | A0A2H3Z347_PHODC; zinc finger transcription factor YY1-like isoform X1 | ||||
STRING | XP_008807673.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-127 | C2H2 family protein |
Publications ? help Back to Top | |||
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