PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912501.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 509aa    MW: 51598.6 Da    PI: 9.4776
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912501.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.53.9e-411202302118
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                      ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s        + +a
  XP_010912501.1 120 VVAKRSSKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGS--------SLSA 206
                     5789*****************************************************************99966666666666........2333 PP

             TCP  96 kskksqksaasalnlak.esraka 118
                     +++ks  ++ +al+la+ ++ra+ 
  XP_010912501.1 207 PPSKSAPHSFHALALAHaHHRADY 230
                     333333344445666664566554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576132No hitNo description
PfamPF036341.3E-38125225IPR005333Transcription factor, TCP
PROSITE profilePS5136928.651126180IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MERSDHRHGG GGGGGSGGGG GVTSNSNSSS GCTNGSRSTS DQKQFRHHQG NSSGASSFDL  60
VPLDGRGGGG PASFMGSVIH HTGSGRVDAS LAISSSAAKP DPTPPGPSSS AADASKKAAV  120
VAKRSSKDRH TKVEGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA  180
TGTGTIPANF STLNISLRSS GSSLSAPPSK SAPHSFHALA LAHAHHRADY EEGAGISHST  240
MLGFHQLPHH HPAHQHHLLP TDQIGGLHSA GGSGGGGGGD SSADTYLRKR FREDLFKEEQ  300
QQQHPPPPSQ QEGGGGPSSP SSASKDVRTG GLQLQQRAPH EPAASAAGGM ARPPGVLPAA  360
AMWAVAPNSG AGGAFWMLPV SAGSTAGPSE PSLWTFPTAA GQGQYRTGIP TGGGGGGGTI  420
QPTLPFMSRI NIPGGLEFQG GRAAGALPMG GAAAQHLGLG ISEANLGMLA ALNAYNRAGL  480
SMNSGRHDHH HQSQQHGADG GDDHQTNSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406418TGIPTGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912501.10.0transcription factor TCP8
TrEMBLA0A2H3XIA90.0A0A2H3XIA9_PHODC; transcription factor TCP8-like
STRINGXP_008784216.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-36TCP family protein