PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010912501.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 509aa MW: 51598.6 Da PI: 9.4776

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912501.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.5	3.9e-41	120	230	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s + +a XP_010912501.1 120 VVAKRSSKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGS--------SLSA 206 5789*****************************************************************99966666666666........2333 PP TCP 96 kskksqksaasalnlak.esraka 118 +++ks ++ +al+la+ ++ra+ XP_010912501.1 207 PPSKSAPHSFHALALAHaHHRADY 230 333333344445666664566554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	32	No hit	No description
Pfam	PF03634	1.3E-38	125	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.651	126	180	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MERSDHRHGG GGGGGSGGGG GVTSNSNSSS GCTNGSRSTS DQKQFRHHQG NSSGASSFDL 60 VPLDGRGGGG PASFMGSVIH HTGSGRVDAS LAISSSAAKP DPTPPGPSSS AADASKKAAV 120 VAKRSSKDRH TKVEGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA 180 TGTGTIPANF STLNISLRSS GSSLSAPPSK SAPHSFHALA LAHAHHRADY EEGAGISHST 240 MLGFHQLPHH HPAHQHHLLP TDQIGGLHSA GGSGGGGGGD SSADTYLRKR FREDLFKEEQ 300 QQQHPPPPSQ QEGGGGPSSP SSASKDVRTG GLQLQQRAPH EPAASAAGGM ARPPGVLPAA 360 AMWAVAPNSG AGGAFWMLPV SAGSTAGPSE PSLWTFPTAA GQGQYRTGIP TGGGGGGGTI 420 QPTLPFMSRI NIPGGLEFQG GRAAGALPMG GAAAQHLGLG ISEANLGMLA ALNAYNRAGL 480 SMNSGRHDHH HQSQQHGADG GDDHQTNSH

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MERSDHRHGG GGGGGSGGGG GVTSNSNSSS GCTNGSRSTS DQKQFRHHQG NSSGASSFDL  60
VPLDGRGGGG PASFMGSVIH HTGSGRVDAS LAISSSAAKP DPTPPGPSSS AADASKKAAV  120
VAKRSSKDRH TKVEGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA  180
TGTGTIPANF STLNISLRSS GSSLSAPPSK SAPHSFHALA LAHAHHRADY EEGAGISHST  240
MLGFHQLPHH HPAHQHHLLP TDQIGGLHSA GGSGGGGGGD SSADTYLRKR FREDLFKEEQ  300
QQQHPPPPSQ QEGGGGPSSP SSASKDVRTG GLQLQQRAPH EPAASAAGGM ARPPGVLPAA  360
AMWAVAPNSG AGGAFWMLPV SAGSTAGPSE PSLWTFPTAA GQGQYRTGIP TGGGGGGGTI  420
QPTLPFMSRI NIPGGLEFQG GRAAGALPMG GAAAQHLGLG ISEANLGMLA ALNAYNRAGL  480
SMNSGRHDHH HQSQQHGADG GDDHQTNSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	418	TGIPTGGGGGGGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912501.1	0.0	transcription factor TCP8
TrEMBL	A0A2H3XIA9	0.0	A0A2H3XIA9_PHODC; transcription factor TCP8-like
STRING	XP_008784216.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-36	TCP family protein