PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912499.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 465aa    MW: 51959.7 Da    PI: 7.1045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912499.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-06261282223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C+k F+r+ nL+ H+r H
  XP_010912499.1 261 FCSICKKGFKRSANLRMHMRGH 282
                     6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5258285No hitNo description
PROSITE profilePS5015711.281260287IPR007087Zinc finger, C2H2
SMARTSM003550.0047260282IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-6261311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035562309342IPR015880Zinc finger, C2H2-like
SMARTSM0035520347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDHVQRPTFE ASFSMSNQSA NINPNQLFTQ FGAKSLSGGA GSGQSFHKYS QNLDFSSIWP  60
YDFEQVVKTP DQVAPFANNQ MGQTVDWDPR AMLSKLFFID QKIHQVQDII HSTIDIEGQF  120
SIQPNELAVK QQLVTTDLTC IISQLISTVG NLLPSINDTL LSNISPVGKI GNTVGSPSSF  180
ALNGTLQQNE DFSLEKNVVM QHRDLIRSST DSGDEGIKPV PVKNHDVKVH KDCVDRENLP  240
LGSYEVLELK KEEILAPHTH FCSICKKGFK RSANLRMHMR GHGDEYKTPA ALAKPRNEAS  300
SEPVLIKRYS CPVVGCKRNR EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVL  360
ADLKTHEKHC GCDRWLCSCG TLFSRKDKLL GHVNLFPGHN PASSMGDVKA SGGTDQGRKI  420
EMITEIDSLE PNFPGNSVDD VDDDPCYFFP LNFDSFKFEG LNDSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912496.10.0zinc finger protein STOP1 homolog isoform X1
RefseqXP_010912499.10.0zinc finger protein STOP1 homolog isoform X1
RefseqXP_019703619.10.0zinc finger protein STOP1 homolog isoform X1
SwissprotQ943I61e-154STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XID90.0A0A2H3XID9_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008784214.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-134C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]