PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010912388.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 173aa MW: 19737.4 Da PI: 6.1451

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912388.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.9	7.3e-38	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++l rkC++dC+lapyfp ++p+kf +vhk+FGasnv+k+l+ ++e++reda++s+vyeA+ar++ PvyG+++ i+ lq+ +e l+ +l XP_010912388.1 13 PCAACRLLHRKCSPDCMLAPYFPTDHPEKFGVVHKVFGASNVIKMLQMVEESRREDAVKSMVYEAQARLKSPVYGSTSAIFYLQKCVEDLEDHLR 107 7*******************************************************************************************999 PP DUF260 96 llkee 100 +++++ XP_010912388.1 108 ETRAQ 112 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.604	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-38	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDSQARAIAK PDPCAACRLL HRKCSPDCML APYFPTDHPE KFGVVHKVFG ASNVIKMLQM 60 VEESRREDAV KSMVYEAQAR LKSPVYGSTS AIFYLQKCVE DLEDHLRETR AQLLDAREQR 120 DQLLSVLTDT YHGSQFYHTN DPVFDDASAM RTDTNMIHVQ SAGENPMNYY QMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	13	114	11	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	13	114	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912388.1	1e-129	LOB domain-containing protein 25
Swissprot	Q9SK08	2e-39	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2H3X1V2	5e-91	A0A2H3X1V2_PHODC; LOB domain-containing protein 1-like
STRING	XP_008777046.1	8e-92	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-42	LOB domain-containing protein 11