PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912385.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 940aa MW: 101889 Da PI: 6.3415

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912385.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	886	923	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+++++ Lq XP_010912385.1 886 RQMIQDRIKELREIVPNgA------KCSIDALLEKTIKHMLFLQ 923 77899**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.5E-35	141	313	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.588	873	922	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-4	886	928	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MEGMMAVSGT SQFNTCSQKG PPLLVNFLLA PKRLVALSVW LVHGWPETGG GDGGGGWEGG 60 AGEEEGRRGQ DEAGWEGLLP RELGRNRSPD RGGSDVCPSL LLSFSLRLAF LAFLLRFGCE 120 KSGFAECSCL EALRGTMGLM LREALKSLCA EIGWSYAVFW RAIGARNPMH LVWEDGYCER 180 VLGISGFEAV DLLLKEQGLI RNHNNDHASE LRGQSEDRVG MLVNKIMAAQ VHVVGAGIVG 240 QAALTGNHQW IIQDTLHDYG CIAEGLAEIN HQFLAGIQTI AIIPVIPHGV VQLGATQMII 300 ENIVFVNHVR SLFAQLAHVP GALFSDITQK TLSQRSQVHS SPAMQISYHQ STNTCTQSSE 360 NFPQMASEVT STKQTITNKA MLLAGQFQPN VYPGVKSVHH ANSQLGNRAA GAQIILSKPD 420 ESFIHQLPSV PSMEGQNQPL VLTSGASFSG LTFPEEQLLL MSNVRSADNT ESALDNGKID 480 QLKSSKCNLS SSLKDPDVVH FFGTSGSLEN ANDPGNFGSL PDGTTESIRV SCAKSSLCGV 540 AQMSNQRNHS NSSHGISGNS QQNQLSAMKN SQTVLTTEKQ KVKNNLFQAS HAPSSESDAS 600 DLCHNLLVGS LPAHRVSNSN CAWQDQRSCN VACGANVACT AHGQNLKNLD ASEPPHTLNE 660 KTSFLPMEPM SGNDLFDMLG LEDKTDYACG SLDDVLLWRD DLNACKLDAD ISSLSTQLDV 720 CSTFDSLNDE IFCSQIFSVA DSDQLLDAVI SKFNSGAKQS SDDSMSCKTS ITNIHISHHG 780 DSPNIGQVDL LEQVQGENFV LAPMLVKPEK AASSYIKPAC SLDKTEKCSQ RVGFHKSQIR 840 LWVESGQNVK SDSLSVSNGK KVEDIGKLNR KRPRPGESPR PRPKDRQMIQ DRIKELREIV 900 PNGAKCSIDA LLEKTIKHML FLQSVTKHVD KLKEIGEPKV

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MEGMMAVSGT SQFNTCSQKG PPLLVNFLLA PKRLVALSVW LVHGWPETGG GDGGGGWEGG  60
AGEEEGRRGQ DEAGWEGLLP RELGRNRSPD RGGSDVCPSL LLSFSLRLAF LAFLLRFGCE  120
KSGFAECSCL EALRGTMGLM LREALKSLCA EIGWSYAVFW RAIGARNPMH LVWEDGYCER  180
VLGISGFEAV DLLLKEQGLI RNHNNDHASE LRGQSEDRVG MLVNKIMAAQ VHVVGAGIVG  240
QAALTGNHQW IIQDTLHDYG CIAEGLAEIN HQFLAGIQTI AIIPVIPHGV VQLGATQMII  300
ENIVFVNHVR SLFAQLAHVP GALFSDITQK TLSQRSQVHS SPAMQISYHQ STNTCTQSSE  360
NFPQMASEVT STKQTITNKA MLLAGQFQPN VYPGVKSVHH ANSQLGNRAA GAQIILSKPD  420
ESFIHQLPSV PSMEGQNQPL VLTSGASFSG LTFPEEQLLL MSNVRSADNT ESALDNGKID  480
QLKSSKCNLS SSLKDPDVVH FFGTSGSLEN ANDPGNFGSL PDGTTESIRV SCAKSSLCGV  540
AQMSNQRNHS NSSHGISGNS QQNQLSAMKN SQTVLTTEKQ KVKNNLFQAS HAPSSESDAS  600
DLCHNLLVGS LPAHRVSNSN CAWQDQRSCN VACGANVACT AHGQNLKNLD ASEPPHTLNE  660
KTSFLPMEPM SGNDLFDMLG LEDKTDYACG SLDDVLLWRD DLNACKLDAD ISSLSTQLDV  720
CSTFDSLNDE IFCSQIFSVA DSDQLLDAVI SKFNSGAKQS SDDSMSCKTS ITNIHISHHG  780
DSPNIGQVDL LEQVQGENFV LAPMLVKPEK AASSYIKPAC SLDKTEKCSQ RVGFHKSQIR  840
LWVESGQNVK SDSLSVSNGK KVEDIGKLNR KRPRPGESPR PRPKDRQMIQ DRIKELREIV  900
PNGAKCSIDA LLEKTIKHML FLQSVTKHVD KLKEIGEPKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	870	874	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912383.2	0.0	transcription factor LHW isoform X1
TrEMBL	A0A3Q0HWD2	0.0	A0A3Q0HWD2_PHODC; transcription factor LHW-like isoform X1
STRING	XP_008784115.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-22	conserved peptide upstream open reading frame 7