PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912232.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 583aa    MW: 64179.7 Da    PI: 4.5735
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912232.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.1e-341412332103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++l+ lisw ++g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k ll++
  XP_010912232.1 141 FLSKTYELVDDPSLDLLISWGSTGKSFVVWDPVEFARAVLPRNFKHNNFSSFVRQLNTYGFRKIDADR---------WEFANEDFVRGNKPLLRN 226
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r++s+
  XP_010912232.1 227 INRRTSS 233
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-57137230IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-34137230IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-36138230IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-30141230IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-18141164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-18179191IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340180204IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-18192204IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEPGDQPLRP LTPIQSSPFS SSSPSPISPS SSALMETAMN RHSGEGSSFT FSSSSSSSSP  60
FMGFGARSAS KLHPSPPLEP VIEPFGEIPD FSSQPPPRRT GEKLPPCSTG SSSSSGDGAG  120
GESVQIPRPL EALQSAPIPP FLSKTYELVD DPSLDLLISW GSTGKSFVVW DPVEFARAVL  180
PRNFKHNNFS SFVRQLNTYG FRKIDADRWE FANEDFVRGN KPLLRNINRR TSSQVQQVGT  240
QVCSSAKMGK PELESELHTL REEKSTLMQE VIRLQQEHLM TTQQMDALNQ QMESVVQRQK  300
QMVSFLAKVL QNPVFLAHLK LLKEQREIAS TRVRRKFLKQ QSPNHSDLDK SIEHQTGKKR  360
LEFTGSTSAL QGVENSVSKL LPDNLLQDMV EKLGLDTNRR ELLRGSDETG LEVLDPLLLD  420
ADSAAIQGEL PESSQTNMGF SGTECSASFP EDITPERMFS DAVVLATEGA GPDPSTVSFK  480
GKNVMEKTEV TFGGSDYVVS FPEDTFQEKM FSDAIVSSNK TVSEQEEIWN IGLEAGECSL  540
SYCHNVWDSL AHDAPNIDVA DGTGALWDID LQTLEEDLEY DKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-2513823317123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912232.10.0heat stress transcription factor A-3
TrEMBLA0A2H4A1810.0A0A2H4A181_PHODC; heat stress transcription factor A-3-like isoform X1
STRINGXP_008775120.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-77heat shock transcription factor A3