PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Trihelix | ||||||||
Protein Properties | Length: 583aa MW: 63109.5 Da PI: 7.0095 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.7 | 1.1e-16 | 196 | 284 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + L++a++e+ +l+rg+l++ +We+v+ + +++ +s +qCk+k++nl+kryk + ++ +++ s s++p+f+++e XP_010912202.1 196 EWSDTAIGSLLDAYTERYVQLNRGNLRGRDWEDVATIVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLSISHWPWFKKME 284 5********************************98877666699999*************************998.89999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-20 | 194 | 286 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 2.7E-68 | 329 | 576 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.353 | 341 | 577 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 3.4E-54 | 342 | 576 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 1.63E-97 | 344 | 577 | No hit | No description |
Pfam | PF00696 | 1.0E-19 | 344 | 556 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MASCDDDFAL LGDEAQSQPP PPPQQQQAGA FAAAHRYVTK GPLHIQSRPL PPLAAISSPK 60 KGVAGGGHED PEDFGEAFGQ TDASNRPGGA PAFPEVSHHH HHHCFADDAN PFGTPQPDDD 120 DDDDPNNDPE RKSRGAATPA SHPHPHHHGP PPSSRPDPKR KDRDDVSDGE SPYCYNSAAK 180 KGRHMSSGDY RKDREEWSDT AIGSLLDAYT ERYVQLNRGN LRGRDWEDVA TIVSDRCDKQ 240 KAGKSVEQCK NKIDNLKKRY KVECQRLSSG GLSISHWPWF KKMEQIVGSS SSSSKAAGDE 300 DKSGALGGTG MVTRQMKRYP AAASGPVNLT NNSKMKSLTN PRWKRVVLKI SGAALVGAGP 360 QNVDPKVTML IAREIAMANR VGVEVAVVVG GRNFFSSDTW VAATGIDRAA TYQISMMASV 420 MNAILLQASL EKIGVETRVQ TALMMQEIAE PYIRRRAIRH LEKGRVVIFG GIGAGTGNPL 480 FSNDTAAALR AFEINANVVL KGTTADDVYD CNSRNSNNVA FEHISFRELV SRGFTAIDMT 540 AITFCEENNI PVVLFNLLEP GNISSALCGD QVGTFVDQTG RLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek5_B | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek5_C | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek5_D | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek5_E | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek5_F | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_A | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_B | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_C | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_D | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_E | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
3ek6_F | 7e-60 | 337 | 576 | 3 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912202.1 | 0.0 | uncharacterized protein LOC105038186 | ||||
Refseq | XP_010912203.1 | 0.0 | uncharacterized protein LOC105038186 | ||||
TrEMBL | A0A2H3ZFP5 | 0.0 | A0A2H3ZFP5_PHODC; uncharacterized protein LOC103723839 isoform X1 | ||||
STRING | XP_008813118.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-178 | Trihelix family protein |