PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912147.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 595aa    MW: 65781.2 Da    PI: 8.0557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912147.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13448494455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_010912147.1 448 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 494
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-5058244IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19447512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-14447498No hitNo description
Gene3DG3DSA:4.10.280.102.7E-19448514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10448494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.476530595IPR002912ACT domain
CDDcd048730.00701543587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKTEMGTGVG VGVGLSVWSD EDRAMAVAVL GHQAVDYLFS SHVSSDGLLT AIGGDADLQN  60
KFQDLVDRPG SPWASAIFWQ ISRSKSGDLV LGWGDGHCRE LRDGEEDLRR SAAALDDGRQ  120
KMRKRVLQKL HVLSGGADDE NYALRLDRVT DVEMFFLASM YFSFPRGTGG PGKALASREH  180
VWVSDPSLRL PTLAADYCVR AFLARSAGFR TVVLVPFDTG VLELGSVKTV PESFEALQMI  240
RAVFSAGEKK DENGLVFRRV SASEEFPRIF GKDLNIGRRS QFNDRLSVAT KVEERPFEIQ  300
PNGGNHHRMV PVPVSSGPVN GLNWTQQQKF ANGMVVIGGG EVDPSSRAFV HHSNGVRDDP  360
RMNLFSTPKQ QQQQQQQQPP PPQPRQIDFS GGATSRASGA LAARLGAMES EHSDAEASCK  420
EERPGAMDER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  480
SLLGDAIAYI TELQKKLKEM EAERERWPES TSRLGQAPEI DVQAVHDEVI VRVSCPMDTH  540
PVSKVIQVFK ESQINVVDSK VSASNETVLH TFVVKSPGSE QLTRDKLVAA ISRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-29442504264Transcription factor MYC2
5gnj_B9e-29442504264Transcription factor MYC2
5gnj_E9e-29442504264Transcription factor MYC2
5gnj_F9e-29442504264Transcription factor MYC2
5gnj_G9e-29442504264Transcription factor MYC2
5gnj_I9e-29442504264Transcription factor MYC2
5gnj_M9e-29442504264Transcription factor MYC2
5gnj_N9e-29442504264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429437RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912147.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2H3ZQG20.0A0A2H3ZQG2_PHODC; transcription factor bHLH13-like
STRINGXP_008790159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-150bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]