PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010911943.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 300aa MW: 32843.6 Da PI: 4.8142

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010911943.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.3e-38	30	85	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ XP_010911943.1 30 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 85 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	16	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	30	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-32	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MLSSWDNILP CPTRPVMVDR RWKPNVEIAP NCPRCDSPNT KFCYYNNYSL SQPRYFCKGC 60 RRYWTKGGSL RNVPVGGGCR KNRRGKSVRL STVVPPDLSY GRRLSGQIRP DLALDGMVGN 120 STGSVQSMDA STTTDGSTID LALLYAKFLN QHPVVEPGLG VTELPGGIDE SFDSSGRQSD 180 TNLNQQTPAP LPNQYNLVEC QRVSEPIAEA LLGDGDQQSI GNHDLPVDPS AYESPAFPTE 240 GISSFLSSNC PGVPNLASEA ANYQGFGSLQ LEDSMALHQN LIVNDWSTMD YSSLEAFYWS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911943.1	0.0	uncharacterized protein LOC105037989
TrEMBL	A0A2H3X8G8	0.0	A0A2H3X8G8_PHODC; dof zinc finger protein DOF3.5-like
STRING	XP_008779883.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-39	Dof family protein