PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 535aa MW: 58865.6 Da PI: 6.6005

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010911884.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.4e-06	294	315	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H XP_010911884.1 294 FCVICGKGFKRDANLRMHMRGH 315 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.03E-5	291	318	No hit	No description
SMART	SM00355	0.015	293	315	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	293	320	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.1E-5	294	344	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	295	315	IPR007087	Zinc finger, C2H2
SMART	SM00355	71	342	375	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	26	380	402	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MDPKLRINSE ALAKSSCQMM GDTSRNFNLG QPFIQFNPIN LCYGGGPEQT FPEFPPTLGT 60 EARSLYQPEP EVKSANQFKP SPNVNNTILD WNPRLILSNL SFLEQKIHQV QAIVQSIINQ 120 ESQFSNRANE MFAQQQLVTA DLTSIIIQLI STAGSLLPSI KNTLVSTNPS AGQLGSFIGA 180 PTSFGLNVSQ QQNAVIPMEV PKASACDKLI DGLNKDSCRK EGSELIKGLH GHGNEDVELI 240 KCLKSDSEGT ELASLEDHDV KDSDDGVDGE NLPPGSYEVL QLEKEEILAP HTHFCVICGK 300 GFKRDANLRM HMRGHGDEYK TPAALAKPNK ESTSEPALIK RYSCPFVGCK RNKEHKKFQP 360 LKTILCVKNH YKRSHCDKSY ICSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD 420 KLFGHVSLFQ GHTPVLAVDD AKVLGTFDQA RPNEVMNDMV GTLEYNFAGR TLDDVQSLNI 480 KGVDVGTGCF SPMNFDACNF GGLDEFLHPA SEVSEGPFSF LPFGSSNLIQ GSGQN

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MDPKLRINSE ALAKSSCQMM GDTSRNFNLG QPFIQFNPIN LCYGGGPEQT FPEFPPTLGT  60
EARSLYQPEP EVKSANQFKP SPNVNNTILD WNPRLILSNL SFLEQKIHQV QAIVQSIINQ  120
ESQFSNRANE MFAQQQLVTA DLTSIIIQLI STAGSLLPSI KNTLVSTNPS AGQLGSFIGA  180
PTSFGLNVSQ QQNAVIPMEV PKASACDKLI DGLNKDSCRK EGSELIKGLH GHGNEDVELI  240
KCLKSDSEGT ELASLEDHDV KDSDDGVDGE NLPPGSYEVL QLEKEEILAP HTHFCVICGK  300
GFKRDANLRM HMRGHGDEYK TPAALAKPNK ESTSEPALIK RYSCPFVGCK RNKEHKKFQP  360
LKTILCVKNH YKRSHCDKSY ICSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD  420
KLFGHVSLFQ GHTPVLAVDD AKVLGTFDQA RPNEVMNDMV GTLEYNFAGR TLDDVQSLNI  480
KGVDVGTGCF SPMNFDACNF GGLDEFLHPA SEVSEGPFSF LPFGSSNLIQ GSGQN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911884.1	0.0	zinc finger protein STOP1 homolog
Refseq	XP_010911885.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	0.0	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2H3XGG3	0.0	A0A2H3XGG3_PHODC; zinc finger protein STOP1 homolog
STRING	XP_008783403.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-155	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]