PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911783.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 231aa MW: 26133.3 Da PI: 4.9682 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.2 | 1.9e-10 | 164 | 197 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+++LA+ +gL+ +q+ +WF N+R ++ XP_010911783.1 164 WPYPTEEEKAKLAEMTGLDPKQINNWFINQRKRH 197 58*****************************885 PP | |||||||
2 | ELK | 35.7 | 1.9e-12 | 117 | 138 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL++L++EF+ XP_010911783.1 117 ELKEMLLKKYSGYLSNLRKEFL 138 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 3.0E-25 | 17 | 68 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.0E-24 | 20 | 67 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.261 | 117 | 137 | IPR005539 | ELK domain |
SMART | SM01188 | 1.9E-6 | 117 | 138 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.0E-10 | 117 | 138 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.054 | 137 | 200 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-15 | 139 | 204 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-21 | 139 | 209 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 142 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.56E-13 | 149 | 201 | No hit | No description |
Pfam | PF05920 | 3.0E-17 | 157 | 196 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 175 | 198 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MASLLEEIGR RRYTSAGCGE IGADPELDEF MESYCRVLQR YKEELSKPFD EAASFLNSIE 60 VQLSNLCKGC TTSSSTTTAT GNSPSDEVVG SSEEELSCGD VDASESQESG SRLADHELKE 120 MLLKKYSGYL SNLRKEFLKK RKKGKLPKDA RLTLLDWWQT HYRWPYPTEE EKAKLAEMTG 180 LDPKQINNWF INQRKRHWKP SEDMQFALME GVGGGGSNET MLYFDRGTIG P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 141 | LRKEFLKKRK |
2 | 138 | 142 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911783.2 | 1e-171 | homeobox protein knotted-1-like 1 | ||||
Refseq | XP_010938260.1 | 1e-171 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 2e-99 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | D6PAL4 | 1e-139 | D6PAL4_COCNU; KNOTTED-like homebox protein 2 | ||||
STRING | XP_008781110.1 | 1e-140 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-61 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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