PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010911458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 26069 Da PI: 6.167 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58.2 | 1.7e-18 | 195 | 232 | 1 | 37 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpvkk+ XP_010911458.1 195 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApACPVKKQ 232 58***************************99******7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-18 | 180 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-16 | 188 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.292 | 190 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-8 | 195 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 196 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MDTSSRPSSS EHKNSITNSQ DKQLESIKDE MGEVREENER LKAFLAQMVK DYQSLKMHVF 60 DIVQKEHFKK PAETSSGLGD VEEPELVSLS LGASASRNRN EEEKRKENER INEGLTLGLH 120 YKIDGSSSSQ SEPPANLSPD NSFEEPEKED AGREPWPPTK TIFESSRNGE DEVLPQPPVK 180 KARVSVRARC DAPTMNDGCQ WRKYGQKTAK GNPCPRAYYR CTVAPACPVK KQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911458.3 | 1e-173 | probable WRKY transcription factor 72 isoform X1 | ||||
Swissprot | A0A3Q7GFB5 | 1e-64 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A3Q0IDL5 | 1e-124 | A0A3Q0IDL5_PHODC; probable WRKY transcription factor 72 | ||||
STRING | XP_008808351.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 8e-47 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
---|---|---|---|
|