PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911318.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 326aa    MW: 36298.2 Da    PI: 8.4348
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911318.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34181102103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k y++++d++++ li+w + +nsf+vld+ +f++ +Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF+h+sF +g+++ll++
  XP_010911318.1  18 FVAKAYQMVNDPRTDALIRWGKGNNSFLVLDPADFSQLLLPFYFKHSNFSSFVRQLNTYGFKKVDPDR---------WEFAHESFLRGQTHLLTS 103
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r++++
  XP_010911318.1 104 IVRRQKR 110
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-3711101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5214107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3314107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGKSSSNIE YQIQVAPFVA KAYQMVNDPR TDALIRWGKG NNSFLVLDPA DFSQLLLPFY  60
FKHSNFSSFV RQLNTYGFKK VDPDRWEFAH ESFLRGQTHL LTSIVRRQKR KDGSSSSGDR  120
KDGIEGEEEE ERLIKELGRL RQEQRALQEE LQGMSERLQA TEMRPRKMMS FLVKVAEDPD  180
FLPRLILSRK QQYLASEKKQ RLVGPPTPPP LSSPHSLMPN GVSPPSDIGS AAERTNFCPL  240
EHRAGPLALE AQKLTLPMFY NTSVDTGFAG GVSANVSVPQ MNVVGADTVI SGSQMGLLPE  300
FGVVETSSTA KTSAPFPFSL LGHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231410725129Heat shock factor protein 1
5d5v_B1e-231410725129Heat shock factor protein 1
5d5v_D1e-231410725129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911318.10.0heat stress transcription factor C-1b
TrEMBLA0A2H3Z8J00.0A0A2H3Z8J0_PHODC; heat stress transcription factor C-1b-like
STRINGXP_008810034.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-58heat shock transcription factor C1