PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911272.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 269aa    MW: 30445.9 Da    PI: 9.4044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911272.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08105149554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h +rEr+RR+++ ++++ L ++l ++      K +K +i++ A  Y+++L
  XP_010911272.1 105 HMMRERQRREKLSQRYADLYSMLSSR-----SKGDKNSIVQSAAAYVREL 149
                     899**********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.341100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-13103168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5104149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-7104154No hitNo description
Gene3DG3DSA:4.10.280.103.7E-10104166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDPFTSFSEE LIHGDNMLYW AFSPAPAFDL VATIPEPAIV DPPVVHRSAF RPYARPDNGQ  60
IKEAVSSGNG DHRKSIHQRM IEMVRRIPKA KEECKGLEMS RGFKHMMRER QRREKLSQRY  120
ADLYSMLSSR SKGDKNSIVQ SAAAYVRELK EVKEQMQRRN EELMTMISGS NGRTEEAKIK  180
FRVANPSSAI DSMIGALRCL KTIDVEARAI RSDLSGHELS AIMSIETKVA AGEVERAVEV  240
ALMDVERKLP RPLPRTHGWS QLCHVENVP
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911272.10.0transcription factor BHLH148
SwissprotQ75KV91e-63BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A2H3X3S21e-135A0A2H3X3S2_PHODC; transcription factor BHLH148-like
STRINGXP_008777863.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-26bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]