PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 269aa MW: 30445.9 Da PI: 9.4044 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2.1e-08 | 105 | 149 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++l ++ K +K +i++ A Y+++L XP_010911272.1 105 HMMRERQRREKLSQRYADLYSMLSSR-----SKGDKNSIVQSAAAYVREL 149 899**********************8.....6999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.341 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-13 | 103 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 104 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.24E-7 | 104 | 154 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-10 | 104 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-6 | 106 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDPFTSFSEE LIHGDNMLYW AFSPAPAFDL VATIPEPAIV DPPVVHRSAF RPYARPDNGQ 60 IKEAVSSGNG DHRKSIHQRM IEMVRRIPKA KEECKGLEMS RGFKHMMRER QRREKLSQRY 120 ADLYSMLSSR SKGDKNSIVQ SAAAYVRELK EVKEQMQRRN EELMTMISGS NGRTEEAKIK 180 FRVANPSSAI DSMIGALRCL KTIDVEARAI RSDLSGHELS AIMSIETKVA AGEVERAVEV 240 ALMDVERKLP RPLPRTHGWS QLCHVENVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911272.1 | 0.0 | transcription factor BHLH148 | ||||
Swissprot | Q75KV9 | 1e-63 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | A0A2H3X3S2 | 1e-135 | A0A2H3X3S2_PHODC; transcription factor BHLH148-like | ||||
STRING | XP_008777863.1 | 1e-136 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 5e-26 | bHLH family protein |
Publications ? help Back to Top | |||
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