PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910693.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 493aa    MW: 53237 Da    PI: 8.7521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910693.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-057797323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_010910693.1 77 CEICGKGFQRDQNLQLHRRGH 97
                    *******************88 PP
2zf-C2H214.97.7e-05151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k Hi+ +
  XP_010910693.1 151 WKCDKCSKKYAVQSDWKAHIKIC 173
                     58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-77497No hitNo description
Gene3DG3DSA:3.30.160.604.3E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4897597IPR007087Zinc finger, C2H2
SMARTSM003550.0767597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355270116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4138172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.32E-7146171No hitNo description
SMARTSM0035583151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MMKGLGIQHH QAVDDNMSNL SSASGEASVS PNQQSSFATP NPNPVKKKRS LPGNPDPDAE  60
VIALSPKTLM ATNRFLCEIC GKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VRKKVYICPE  120
VTCVHHDPSR ALGDLTGVKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHI KICGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARSI TANTVADHRP SLGCQPTESH ASSTLPNISV  240
QGAQFPHLMT ATEASASTAS SQGLHELTLK GEHQHQDFNM RPDNILPWVA YQGPGPLLDL  300
PPAIYSTRFG PEFRNENQPP NPPLYQTSAA TPQLSATALL QKAAQMGATM SRPPNSDRMA  360
AHTTSAAGFG LGLSSHQEMC GGGGGDGGGG HLLKDMMMAS MSSPPGLGGG SFEGALGGIL  420
GLKREGSGVE GLTISHGRNE GGGGRGGKDG MTRDFLGLRN FSHREILNMA GLDPCMASSS  480
YEQLQENKET WRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34147208364Zinc finger protein JACKDAW
5b3h_F3e-34147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101113KLKQRSSKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910693.10.0protein indeterminate-domain 7
TrEMBLA0A2H3Z1V30.0A0A2H3Z1V3_PHODC; protein indeterminate-domain 2-like isoform X1
STRINGXP_008807175.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2