PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910608.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family BES1
Protein Properties Length: 595aa    MW: 67189.7 Da    PI: 5.0607
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910608.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82289.96.2e-28112629134
          DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr..........kgskpl....eeaeaagssasaspesslq.sslkssalaspve 108
                     +++GLR++Gn+ lp+raD+n+Vl+AL+reAGw+ve+DGttyr          +   p+      + +   +  +s+es+l+ +slk+s++++ ++
  XP_010910608.1   1 MLTGLRQYGNFLLPARADMNDVLAALAREAGWIVEADGTTYRpssvtapltvA--APPppppPPHTQLAPFPVRSIESPLSaNSLKNSSMKASLD 93 
                     79****************************************77666665431..222345556677788899********99************ PP

          DUF822 109 sysaspksssfpspssldsislasa.......a 134
                     s+++ ++ ++++sp+slds+ +a+        a
  XP_010910608.1  94 SQASLLRIDESLSPASLDSVVVAERdtrgekyA 126
                     ********************9998754443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.7E-301132IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.46E-165153589IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.4E-178156589IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-82162569IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56193207IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56214232IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56236257IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56329351IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56402421IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56436452IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56453464IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56471494IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-56509531IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MLTGLRQYGN FLLPARADMN DVLAALAREA GWIVEADGTT YRPSSVTAPL TVAAPPPPPP  60
PPHTQLAPFP VRSIESPLSA NSLKNSSMKA SLDSQASLLR IDESLSPASL DSVVVAERDT  120
RGEKYANASP INSPECVEAD QLMRESAEGE GDFAGTPYIP VYVMLPTSIV NSYCQLVDVE  180
ATRQELRHLK SLNVDGVVVD CWWGIVEGWS PHKYEWSGYR DLFNIIREFE LKLQVVMAFH  240
ECGGNASGEI PISLPKWVLE IGKDNQDIFF TDREGRRNTE CLSWGIDKER VLKGRTGIEV  300
CFDFMRSFRM EFNDLFEEGF ITAVEIGLGA SGELKYPSHP ERIGWRYPGI GEFQCYDKYM  360
QQNLRRAAKL RGHSFWARGP DNAGHYNSRP HETGFFCDRG DYDGYYGRFF LHWYAQTLID  420
HADQVLSLAN LAFEGTQVII KIPAVYWWYK TSSHAAELTA GFYNPTNQDG YSPIFDMLKK  480
HSAAMKFVCY GPQHSAQESD EALADLEGLS WQVMNSAWDR SLAVAAHGTL PCHDRETFIR  540
IIENAKPRND PDRRHLSFFT YQQLTSVFME REMCFSELDN FIKCMHGEVV NDVQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13215858811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910608.20.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2H3Z5J90.0A0A2H3Z5J9_PHODC; Beta-amylase
STRINGXP_008808792.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]