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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 21494.4 Da PI: 7.4067 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 8.7e-15 | 82 | 171 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 v+t+s v + +l++pk+ + +++++ + + ++++We+++ +++ +r + +GWk+F+ +n+Lk gD +v++l++++ ++ v+++ XP_010910571.1 82 CVMTKSQVQAPFQLTIPKNIW--MLLPSAC--VPAVLSYRNKTWEMRYYGDRNLRR--FDSGWKHFAVDNNLKIGDACVLELMDDQHLKFQVQIL 170 578899999999999999987..2334334..456778899*******55777777..8************************9999999**999 PP - CS B3 98 r 98 r XP_010910571.1 171 R 171 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 76 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 76 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-16 | 78 | 171 | No hit | No description |
SMART | SM01019 | 7.0E-4 | 80 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-13 | 80 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.434 | 80 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MTDHSVCSSN THRRHCKAPV AARSLSSQES TNGANLCLPS KSSKNGDNKV EHCAPFSSPS 60 DSATVDEKDE IVPLSGKPYF ACVMTKSQVQ APFQLTIPKN IWMLLPSACV PAVLSYRNKT 120 WEMRYYGDRN LRRFDSGWKH FAVDNNLKIG DACVLELMDD QHLKFQVQIL RGDIPREIVE 180 SGCSFDTPIM IE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910571.2 | 1e-144 | B3 domain-containing protein Os04g0386900 isoform X1 | ||||
TrEMBL | A0A2H3YR23 | 1e-125 | A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_008802551.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-09 | B3 family protein |